Package: HoloFoodR
Type: Package
Version: 1.4.0
Authors@R: 
    c(
    person(
        given = "Tuomas", family = "Borman", role = c("aut", "cre"),
        email = "tuomas.v.borman@utu.fi",
        comment = c(ORCID = "0000-0002-8563-8884")
        ),
    person(
        given = "Artur", family = "Sannikov", role = c("aut"),
        email = "arsann@utu.fi",
        comment = c(ORCID = "0000-0001-7765-123X")
        ),
    person(
        given = "Leo", family = "Lahti", role = c("aut"),
        email = "leo.lahti@iki.fi",
        comment = c(ORCID = "0000-0001-5537-637X")
        )
    )
Title: R interface to EBI HoloFood resource
Description: Utility package to facilitate integration and analysis of
        EBI HoloFood data in R. This package streamlines access to the
        resource, allowing for direct loading of data into formats
        optimized for downstream analytics.
biocViews: Software, Infrastructure, DataImport, Microbiome,
        MicrobiomeData
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
Depends: R(>= 4.4.0), MultiAssayExperiment, TreeSummarizedExperiment
Imports: dplyr, httr2, jsonlite, S4Vectors, stringi, stats,
        SummarizedExperiment, utils
Suggests: BiocStyle, DT, ggh4x, ggsignif, knitr, MGnifyR, mia, miaViz,
        MOFA2, patchwork, reticulate, rmarkdown, scater, shadowtext,
        testthat, UpSetR
URL: https://github.com/EBI-Metagenomics/HoloFoodR
BugReports: https://github.com/EBI-Metagenomics/HoloFoodR/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:30:56 UTC
RemoteUrl: https://github.com/bioc/HoloFoodR
RemoteRef: RELEASE_3_22
RemoteSha: e2cd9d09b09fe985ba3c1128113d6412b464bb81
NeedsCompilation: no
Packaged: 2026-01-24 20:48:50 UTC; root
Author: Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Artur Sannikov [aut] (ORCID: <https://orcid.org/0000-0001-7765-123X>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.5.2; ; 2026-01-24 21:11:29 UTC; unix
