AcceptableRange	AcceptableRange
adjusted_prevalence	adjusted_prevalence
adjust_abundance_by_factor	adjust_abundance_one_third
adjust_abundance_one_third	adjust_abundance_one_third
alluvial_plot	alluvial_plot
calculate_list_average_scaling_factors	calculate_list_average_scaling_factors
calculate_spikeIn_factors	calculate_spikeIn_factors
calculate_spike_percentage	calculate_spike_percentage
calculate_spike_percentage_list	calculate_spike_percentage_list
calculate_summary_stats_table	calculate_summary_stats_table
color_palette	color_palette
conclusion	conclusion
convert_categorical_to_factors	convert_categorical_to_factors
convert_phyloseq_to_tse	convert_phyloseq_to_tse
convert_to_absolute_counts	convert_to_absolute_counts
convert_tse_to_phyloseq	convert_tse_to_phyloseq
create_directory	create_directory
create_list	create_list
degree_network	degree_network
detect_common_asvs_taxa	detect_common_asvs_taxa
ExpData-class	ExpData-class
extract_neighbors	extract_neighbors
filter_and_split_abundance	filter_and_split_abundance
get_long_format_data	get_long_format_data
get_otu_table	get_otu_table
get_phy_tree	get_phy_tree
get_reference_seq	get_reference_seq
get_sample_data	get_sample_data
get_sample_sums	get_sample_sums
get_tax_table	get_tax_table
gm_mean	gm_mean
imbalance_calculate_list_average_scaling_factors	imbalance_calculate_list_average_scaling_factors
label	label
load_graphml	load_graphml
metadata_full	metadata_full
MG_shapes	MG_shapes
my_custom_theme	my_custom_theme
node_level_metrics	node_level_metrics
norm.clr	norm.clr
norm.css	norm.css
norm.DESeq	norm.DESeq
norm.med	norm.med
norm.Poisson	norm.Poisson
norm.QN	norm.QN
norm.rar	norm.rar
norm.rle	norm.rle
norm.TC	norm.TC
norm.TMM	norm.TMM
norm.tss	norm.tss
norm.UQ	norm.UQ
normalization_set	normalization_set
perform_and_visualize_DA	perform_and_visualize_DA
physeq	physeq
physeq_16SOTU	physeq_16SOTU
physeq_ITSOTU	physeq_ITSOTU
plotbar_abundance	plotbar_abundance
plot_core_microbiome_custom	plot_core_microbiome_custom
plot_spikein_tree_diagnostic	plot_spikein_tree_diagnostic
Pre_processing_hashcodes	Pre_processing_hashcodes
Pre_processing_species	Pre_processing_species
Pre_processing_species_list	Pre_processing_species_list
proportion_adj	proportion_adj
quadrant_plot	quadrant_plot
RandomForest_selected	RandomForest_selected
randomsubsample_Trimmed_evenDepth	randomsubsample_Trimmed_evenDepth
random_subsample_WithReductionFactor	random_subsample_WithReductionFactor
regression_plot	regression_plot
relativized_filtered_taxa	relativized_filtered_taxa
remove_zero_negative_count_samples	remove_zero_negative_count_samples
ridge_plot_it	ridge_plot_it
set_nf	set_nf
simulate_network_robustness	simulate_network_robustness
summ_ASV_OTUID	summ_ASV_OTUID
summ_count_phyloseq	summ_count_phyloseq
summ_phyloseq_sampleID	summ_phyloseq_sampleID
taxa_barplot	taxa_barplot
tidy_phyloseq_tse	tidy_phyloseq_tse
tse	tse
validate_spikein_clade	validate_spikein_clade
weight_Network	weight_Network
