Package: CircSeqAlignTk
Type: Package
Title: End-to-End Analysis of Small RNA-Seq Data from Viroids
Version: 1.12.0
Authors@R: 
    c(person("Jianqiang", "Sun",
                email = "sun@bitdessin.dev",
                role = c("cre", "aut"),
           comment = c(ORCID = "0000-0002-3438-3199")),
      person("Xi", "Fu", role = c("ctb")),
      person("Wei", "Cao", role = c("ctb")))
Description: 
    CircSeqAlignTk is a toolkit for the analysis of RNA-Seq data
    derived from circular genome sequences, with a primary focus on viroids,
    circular RNAs typically consisting of a few hundred nucleotides.
    The toolkit supports an end-to-end analysis pipeline,
    from alignment to visualization.
Depends: R (>= 4.2)
Imports: stats, tools, utils, R.utils, methods, S4Vectors, rlang,
        magrittr, dplyr, tidyr, ggplot2, BiocGenerics, Biostrings,
        IRanges, ShortRead, Rsamtools, Rbowtie2, Rhisat2, shiny,
        shinyFiles, shinyjs, plotly, parallel, htmltools
Suggests: knitr, rmarkdown, testthat, BiocStyle
VignetteBuilder: knitr
biocViews: Sequencing, SmallRNA, Alignment, Software
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
URL: https://github.com/bitdessin/CircSeqAlignTk
BugReports: https://github.com/bitdessin/CircSeqAlignTk/issues
git_url: https://git.bioconductor.org/packages/CircSeqAlignTk
git_branch: RELEASE_3_22
git_last_commit: d5a1377
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 02:19:39 UTC; biocbuild
Author: Jianqiang Sun [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-3438-3199>),
  Xi Fu [ctb],
  Wei Cao [ctb]
Maintainer: Jianqiang Sun <sun@bitdessin.dev>
Built: R 4.5.1; ; 2025-10-30 09:19:29 UTC; unix
