bedbaser
This is the development version of bedbaser; to use it, please install the devel version of Bioconductor.
A BEDbase client
Bioconductor version: Development (3.21)
A client for BEDbase. bedbaser provides access to the API at api.bedbase.org. It also includes convenience functions to import BED files into GRanges objects and BEDsets into GRangesLists.
Author: Andres Wokaty [aut, cre] (ORCID:
Maintainer: Andres Wokaty <jennifer.wokaty at sph.cuny.edu>
citation("bedbaser")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("bedbaser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bedbaser")| bedbaser | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Software, ThirdPartyClient |
| Version | 0.99.23 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | Artistic License 2.0 |
| Depends | |
| Imports | AnVIL(>= 1.16.0), BiocFileCache, dplyr, GenomeInfoDb, GenomicRanges, httr, methods, purrr, rtracklayer, rlang, R.utils, stats, stringr, tibble, tidyr, tools, utils |
| System Requirements | |
| URL | https://github.com/waldronlab/bedbaser |
| Bug Reports | https://github.com/waldronlab/bedbaser/issues |
See More
| Suggests | BiocStyle, knitr, liftOver, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bedbaser_0.99.23.tar.gz |
| Windows Binary (x86_64) | bedbaser_0.99.23.zip |
| macOS Binary (x86_64) | bedbaser_0.99.23.tgz |
| macOS Binary (arm64) | bedbaser_0.99.23.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/bedbaser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bedbaser |
| Bioc Package Browser | https://code.bioconductor.org/browse/bedbaser/ |
| Package Short Url | https://bioconductor.org/packages/bedbaser/ |
| Package Downloads Report | Download Stats |