Speedy quality assurance via lasso labeling for LC-MS data


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Documentation for package ‘squallms’ version 1.1.0

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extractChromMetrics Extract metrics of chromatographic peak quality
labelFeatsLasso Label similar chromatographic features in bulk via interactive selection
labelFeatsManual Label chromatographic features manually one at a time via interactive interface
logModelFeatProb Model feature quality using a logistic regression
logModelFeatQuality Turn 0-1 likelihood values into categorical (good/bad) classifications
makeXcmsObjFlat Make an XCMS object flat
pickyPCA Perform a PCA on multi-file chromatographic data
updateXcmsObjFeats Update features in an XCMS object