Collection and implementation of public transcriptional cancer
signatures
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Documentation for package ‘signifinder’ version 1.9.3
Help Pages
| ADOSign | Adenosine Signaling Signature |
| APMSign | Antigen Processing Machinery Signature |
| ASCSign | Adult Stem Cell Signature |
| autophagySign | Autophagy Signature |
| availableSignatures | Show Available Signatures |
| CD39CD8TcellSign | CD39+ CD8+ T cells Signature |
| cellCycleSign | Cell-cycle Signature classifier |
| chemokineSign | Chemokine Signature |
| CINSign | Chromosomal instability Signature |
| CISSign | CIS (carcinoma-in situ) Signature |
| CombinedSign | EMT-Inflammation Combined Signature |
| consensusOVSign | ConsensusOV Signature |
| correlationSignPlot | Correlation Plot |
| COXISSign | COX-2-associated Inflammatory Signature |
| DNArepSign | DNA Repair Signature |
| ECMSign | Extracellular Matrix Signature |
| EMTSign | Epithelial-Mesenchymal Transition Signature |
| evaluationSignPlot | Evaluation Plot |
| expandedImmuneSign | ExpandedImmune Signature |
| ferroptosisSign | Ferroptosis Signature |
| geneHeatmapSignPlot | Genes' Signatures' Heatmap |
| getSignGenes | Get Signature Gene List |
| glycolysisSign | Glycolysis Signature |
| heatmapSignPlot | Global Heatmap of Signatures' scores. |
| HRDSSign | Homologous Recombination Deficiency Signature |
| hypoxiaSign | Hypoxia Signature |
| ICBResponseSign | ICB Response Signature |
| IFNSign | IFN-gamma Signature |
| immuneCytSign | Immune Cytolytic Activity Signature |
| immunoScoreSign | Immunogenic Signature |
| interferonSign | Interferon Signature |
| IPRESSign | IPRES Signature |
| IPSOVSign | IPSOV Signature |
| IPSSign | ImmunoPhenoScore Signature |
| IRGSign | Immune-Related Genes Signature |
| ISCSign | Adult Intestinal Stem Cell Signature |
| lipidMetabolismSign | Lipid Metabolism Signature |
| LRRC15CAFSign | LRRC15 CAF Signature |
| matrisomeSign | Core Matrisome Gene signature |
| metalSign | Metal Response Signature |
| MITFlowPTENnegSign | MITFlow/PTENneg Signature |
| mitoticIndexSign | Mitotic Index |
| MPSSign | Melanocytic Plasticity Signature |
| multipleSign | Multiple Signatures Computation |
| oneSignPlot | Scatterplot for a single signature |
| ovse | Example expression data. |
| oxphosSign | Oxidative Phosphorylation Signature |
| PassONSign | passON Signature |
| pyroptosisSign | Pyroptosis Signature |
| ridgelineSignPlot | Ridgeline Plot |
| SCSubtypeSign | Breast Cancer Subtypes Signature |
| stateSign | Cellular States Signature |
| stemCellCD49fSign | CD49fHi Basal Stem Cell Signature |
| stressSign | Stress Response Signature |
| survivalSignPlot | Survival Plot |
| TGFBSign | Pan-Fibroblast TGFB Response Signature |
| TinflamSign | TinflamSign Signature |
| TLSSign | Tertiary Lymphoid Structures (TLS) Signature |
| VEGFSign | VEGF Signature |