Single-cell Mitochondrial Mutation Analysis Tool

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Documentation for package ‘scMitoMut’ version 1.3.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

scMitoMut-package	scMitoMut
export_af	Export the mutation matrix
export_binary	Export the mutation matrix
export_df	Export the mutation matrix
export_dt	Export the mutation matrix
export_pval	Export the mutation matrix
filter_loc	Filter mutations
format.mtmutObj	Print mtmutObj object
get_pval	Get p-value list for single locus
is.mtmutObj	Print mtmutObj object
open_h5_file	Open H5 file
parse_mgatk	Load mtGATK output
parse_table	Load allele count table
plot_af_coverage	QC plot: 2D scatter plot for coverage ~ AF
plot_heatmap	Heatmap plot
print.mtmutObj	Print mtmutObj object
process_locus_bmbb	Fit tree models for one locus
rm_mtmutObj	Remove mtmutObj object
run_model_fit	Fit binomial mixture model for every candidate locus
scMitoMut	scMitoMut
subset_cell	Subset cell and loci
subset_loc	Subset cell and loci