Predict synthetic lethal partners of tumour mutations
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Documentation for package ‘mslp’ version 1.9.0
Help Pages
| comp_slp | Identify SLPs via compensation |
| cons_slp | Identify consensus SLPs |
| corr_slp | Identify SLPs via correlation |
| est_im | Estimate the importance threshold for GENIE3 |
| example_compSLP | SLPs predicted by comp_slp |
| example_comp_mut | Patients mutations to be use in the comp_slp |
| example_corrSLP | SLPs predicted by corr_slp |
| example_corr_mut | Patients mutations to be use in the corr_slp |
| example_expr | Expression data to be used in comp_slp |
| example_z | Expression data to be used in corr_slp |
| genie3 | Run GENIE3 |
| getlink | Get sorted list of regulatory links in GENIE3 results |
| merge_slp | Merge SLPs |
| pp_tcga | Process tumour genomic data |
| scr_slp | Identify SLPs in screen hits |