Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

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Documentation for package ‘globaltest’ version 5.61.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

alias-method	Class "gt.object" for storing the result of the function gt
alias<-	Class "gt.object" for storing the result of the function gt
alias<--method	Class "gt.object" for storing the result of the function gt
bbase	Goodness of fit testing in regression models using Global Test
btensor	Goodness of fit testing in regression models using Global Test
coefficients-method	Multinomial Logistic Regression
comparative	Comparative proportions for the Global Test
covariates	Global Test diagnostic plots
diagnostics	Global Test diagnostic plots
draw	Multiple testing correction for the Global Test
extract	Class "gt.object" for storing the result of the function gt
extract-method	Class "gt.object" for storing the result of the function gt
features	Global Test diagnostic plots
findFocus	Multiple testing correction for the Global Test
fitted.values-method	Multinomial Logistic Regression
focusLevel	Multiple testing correction for the Global Test
globaltest	Global Test
gt	Global Test
gt.object	Class "gt.object" for storing the result of the function gt
gt.object-class	Class "gt.object" for storing the result of the function gt
gt.options	Options for globaltest package
gtBroad	Gene set testing of gene set databases using Global Test
gtConcept	Gene set testing of gene set databases using Global Test
gtGO	Gene set testing of gene set databases using Global Test
gtKEGG	Gene set testing of gene set databases using Global Test
gtKEGGREST	Gene set testing of gene set databases using Global Test
gtKS	Goodness of fit testing in regression models using Global Test
gtLI	Goodness of fit testing in regression models using Global Test
gtPS	Goodness of fit testing in regression models using Global Test
hist-method	Class "gt.object" for storing the result of the function gt
inheritance	Multiple testing correction for the Global Test
leafNodes	Multiple testing correction for the Global Test
length-method	Class "gt.object" for storing the result of the function gt
mlogit	Multinomial Logistic Regression
mlogit-class	Multinomial Logistic Regression
model.matrix-method	Class "gt.object" for storing the result of the function gt
names-method	Class "gt.object" for storing the result of the function gt
names<--method	Class "gt.object" for storing the result of the function gt
p.adjust-method	Class "gt.object" for storing the result of the function gt
p.value	Class "gt.object" for storing the result of the function gt
p.value-method	Class "gt.object" for storing the result of the function gt
reparamZ	Goodness of fit testing in regression models using Global Test
residuals-method	Multinomial Logistic Regression
result	Class "gt.object" for storing the result of the function gt
result-method	Class "gt.object" for storing the result of the function gt
reweighZ	Goodness of fit testing in regression models using Global Test
show-method	Class "gt.object" for storing the result of the function gt
show-method	Multinomial Logistic Regression
size	Class "gt.object" for storing the result of the function gt
size-method	Class "gt.object" for storing the result of the function gt
sort-method	Class "gt.object" for storing the result of the function gt
sterms	Goodness of fit testing in regression models using Global Test
sterms-method	Class "gt.object" for storing the result of the function gt
subjects	Global Test diagnostic plots
subsets	Class "gt.object" for storing the result of the function gt
subsets-method	Class "gt.object" for storing the result of the function gt
summary-method	Class "gt.object" for storing the result of the function gt
summary-method	Multinomial Logistic Regression
weights-method	Class "gt.object" for storing the result of the function gt
z.score	Class "gt.object" for storing the result of the function gt
z.score-method	Class "gt.object" for storing the result of the function gt
[-method	Class "gt.object" for storing the result of the function gt
[[-method	Class "gt.object" for storing the result of the function gt