GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens


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Documentation for package ‘gemini’ version 1.21.0

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%<>% Compound pipe
%>% Pipe
.median_normalize Median normalization
counts Big Papi counts matrix
gemini_boxplot gemini_boxplot
gemini_calculate_lfc Calculate log-fold change
gemini_create_input gemini_create_input
gemini_inference gemini_inference
gemini_initialize gemini_initialize
gemini_parallelization Parallelization in GEMINI
gemini_plot_mae MAE plot
gemini_prepare_input Prepare input before Model creation
gemini_score Scoring Combination Effect
guide.annotation Big Papi guide annotations
initialize_s initialize_s
initialize_tau initialize_tau
initialize_x intialize_x
initialize_y initialize_y
Input Input object from Big Papi
Model Model object from Big Papi
sample.replicate.annotation Big Papi sample and replicate annotations
Sgene2Pguides_hash Gene hashing
Sguide2Pguides_hash Guide hashing
update_mae update_mae
update_s_pb update_s
update_tau_pb update_tau_pb
update_x_pb update_x_p
update_y_pb update_y_pb