Deconvolution by Convex Analysis of Mixtures
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Documentation for package ‘debCAM’ version 1.25.0
Help Pages
| debCAM-package | debCAM: A package for fully unsupervised deconvolution of complex tissues. |
| AfromMarkers | Proportion matrix estimation from marker genes |
| Amat | Deconvoluted matrix accessors |
| Amat-method | Deconvoluted matrix accessors |
| AS-accessor | Deconvoluted matrix accessors |
| CAM | Convex Analysis of Mixtures |
| CAMASest | A and S matrix estimation by CAM |
| CAMASObj | Class "CAMASObj" |
| CAMASObj-class | Class "CAMASObj" |
| CAMMGCluster | MG cluster detection for CAM |
| CAMMGObj | Class "CAMMGObj" |
| CAMMGObj-class | Class "CAMMGObj" |
| CAMObj | Class "CAMObj" |
| CAMObj-class | Class "CAMObj" |
| CAMPrep | Data preprocessing for CAM |
| CAMPrepObj | Class "CAMPrepObj" |
| CAMPrepObj-class | Class "CAMPrepObj" |
| cornerSort | Candidate combinations as corners |
| debCAM | debCAM: A package for fully unsupervised deconvolution of complex tissues. |
| MDL | Minimum Description Length |
| MDLObj | Class "MDLObj" |
| MDLObj-class | Class "MDLObj" |
| MGsforA | Marker genes detected by CAM for estimating A |
| MGstatistic | Statistics for ranking marker genes |
| PCAmat | Dimension-reduction loading matrix accessor |
| PCAmat-method | Dimension-reduction loading matrix accessor |
| plot-method | Minimum Description Length |
| ratMix3 | Gene expression data downsampled from GSE19380 |
| redoASest | Re-estimate A, S matrix |
| reselectMG | Reselect markers by thresholding |
| sffsHull | Sequential Forward Floating Selection (SFFS) to approximate convex hull |
| simplexplot | The plot of scatter simplex |
| Smat | Deconvoluted matrix accessors |
| Smat-method | Deconvoluted matrix accessors |
| XWProj | Perspective projection to obtain simplex |