Tools for performing taxonomic assignment

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Documentation for package ‘clstutils’ version 1.55.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

clstutils-package	Sequence based classification and selection of reference sequences.
classifyPlacements	Taxonomic classification by phylogenetic placement.
clstutils	Sequence based classification and selection of reference sequences.
findOutliers	Identify outlier objects given a square distance matrix.
maxDists	Select a maximally diverse set of items given a distance matrix.
prettyTree	Draw an annotated phylogenetic tree.
refpkgContents	Read the contents of a collection of reference sequences ("refpkg").
seqdat	Annotation for the Enterococcus sequence data set.
seqs	Enterococcus sequence data set.
taxonomyFromRefpkg	Extract taxonomic information from a refpkg.
treeDists	Provide objects for determining distances among nodes of a reference tree.