Bump Hunter

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Documentation for package ‘bumphunter’ version 1.49.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

annotateNearest	Annotate the results of nearest
annotateTranscripts	Annotate transcripts
boundedClusterMaker	Make clusters of genomic locations based on distance
bumphunter	Bumphunter
bumphunter-method	Bumphunter
bumphunter-methods	Bumphunter
bumphunterEngine	Bumphunter
clusterMaker	Make clusters of genomic locations based on distance
dummyData	Generate dummy data for use with bumphunter functions
getSegments	Segment a vector into positive, zero, and negative regions
locfitByCluster	Apply local regression smoothing to values within each spatially-defined cluster.
loessByCluster	Apply loess smoothing to values within each spatially-defined cluster.
matchGenes	Find and annotate closest genes to genomic regions
print.bumps	Bumphunter
regionFinder	Find non-zero regions in vector
runmedByCluster	Apply running median smoothing to values within each spatially-defined cluster
smoother	Smooth genomic profiles
TT	Example data