Bandwise normalization and batch correction of Hi-C data

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Documentation for package ‘bnbc’ version 1.29.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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bnbc-package	Bandwise normalization and batch correction of Hi-C data
band	Get Band
band<-	Get Band
bnbc	Normalize Contact Matrices with BNBC
boxSmoother	Smoothing Operations
cg2bedgraph2	Methods for manipulating cooler files
cgApply	Apply-type methods
cgBandApply	Apply-type methods
cgEx	Sample chr22 Data
colData-method	Class '"ContactGroup"'
colData<--method	Class '"ContactGroup"'
ContactGroup	Class '"ContactGroup"'
ContactGroup-class	Class '"ContactGroup"'
contacts	Class '"ContactGroup"'
contacts<-	Class '"ContactGroup"'
dim-method	Class '"ContactGroup"'
distanceIdx	Class '"ContactGroup"'
dropGroupZeros	Group Zero Operations
gaussSmoother	Smoothing Operations
getBandIdx	Get Band Indices
getBandMatrix	Get Band Matrix
getChrCGFromCools	Methods for manipulating cooler files
getChrIdx	Methods for manipulating cooler files
getGenomeIdx	Methods for manipulating cooler files
getGroupZeros	Group Zero Operations
librarySize	Class '"ContactGroup"'
logCPM	Class '"ContactGroup"'
rowData-method	Class '"ContactGroup"'
rowData<--method	Class '"ContactGroup"'
show-method	Class '"ContactGroup"'
[-method	Class '"ContactGroup"'