1 Introduction

This document explains the functionalities available in the a4Reporting package.

This package contains utility functions to enhance reporting of data for the Automated Affymetrix Array Analysis suite of packages.

2 Create an annotation table

The annotationTable function enhances the reporting of table of genes or gene ontology term.

3 Top table of classification objects

A few utility functions to enhances the reporting of top tables for glmnet, lognet, elnet, pam and pam classification confusion are available.

4 Appendix

4.1 Session information

## R Under development (unstable) (2024-11-20 r87352)
## Platform: x86_64-apple-darwin20
## Running under: macOS Monterey 12.7.6
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libRblas.0.dylib 
## LAPACK: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0
## 
## locale:
## [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## time zone: America/New_York
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] a4Reporting_1.55.0
## 
## loaded via a namespace (and not attached):
##  [1] digest_0.6.37     R6_2.5.1          fastmap_1.2.0     xfun_0.49        
##  [5] cachem_1.1.0      knitr_1.49        htmltools_0.5.8.1 rmarkdown_2.29   
##  [9] lifecycle_1.0.4   cli_3.6.3         xtable_1.8-4      sass_0.4.9       
## [13] jquerylib_0.1.4   compiler_4.5.0    tools_4.5.0       evaluate_1.0.1   
## [17] bslib_0.8.0       yaml_2.3.10       rlang_1.1.4       jsonlite_1.8.9