Peptide Set Test

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Documentation for package ‘PepSetTest’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

AggLimmaWorkflow	Aggregation-based LIMMA workflow
AggPeps	Aggregate peptide abundance values
CompPepSetTest	Competitive peptide set test
CompPepSetTestWorkflow	Competitive Peptide Set Test Workflow
EnframeContrastsRes	Enframe result of LIMMA analysis
EstimInterPepCor	Estimation of inter-peptide correlation
FitContrasts	Empirical Bayes moderated t-test
FitLmerBySample	Fit a linear mixed model
RobustReg	Robust Regression
SelfContPepSetTestWorkflow	Self-contained Peptide Set Test Workflow
TTestwCor	Two-sample t-test accounting for inter-peptide correlation