Perform methylation analysis

Documentation for package ‘MEAL’ version 1.37.0

computeRDAR2	Compute signification of RDA test
correlationMethExprs	Computes the correlation between methylation and expression
exportResults	Exports results data.frames to csv files.
filterResults	Filter the data.frame obtained from probe analysis
getGeneVals	Get all probes related to a gene
getProbeResults	Obtain probe results from a 'ResultSet'
getRDAresults	Get a summary of RDA results
MEAL	MEAL (Methylation and Expression AnaLizer): Package for analysing methylation and expression data
MEAL-defunct	Defunct functions
plotFeature	Plot values of a feature
plotRDA	Plot RDA results
plotRegion	Plot results in a genomic region
runBlockFinder	Run blockFinder
runBumphunter	Run bumphunter
runDiffMeanAnalysis	Run differential mean analysis
runDiffVarAnalysis	Run differential variance analysis
runDMRcate	Run DMRcate
runPipeline	Perform differential methylation analysis
runRDA	Calculate RDA for a set
runRegionAnalysis	Run different DMR detection methods
topRDAhits	Get the top features associated with the RDA