Distributed computing by file or by range
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Documentation for package ‘GenomicFiles’ version 1.43.0
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| assay-method | VcfStack and RangedVcfStack Objects |
| class:GenomicFiles | GenomicFiles objects |
| class:VcfStack | VcfStack and RangedVcfStack Objects |
| colData-method | VcfStack and RangedVcfStack Objects |
| colData<--method | GenomicFiles objects |
| colData<--method | VcfStack and RangedVcfStack Objects |
| colnames-method | VcfStack and RangedVcfStack Objects |
| dim-method | VcfStack and RangedVcfStack Objects |
| dimnames-method | VcfStack and RangedVcfStack Objects |
| dimnames<--method | GenomicFiles objects |
| files | GenomicFiles objects |
| files-method | GenomicFiles objects |
| files-method | VcfStack and RangedVcfStack Objects |
| files<- | GenomicFiles objects |
| files<--method | GenomicFiles objects |
| files<--method | VcfStack and RangedVcfStack Objects |
| findTypeRegistry | Functions for creating and searching a registry of file types. |
| GenomicFiles | GenomicFiles objects |
| GenomicFiles-class | GenomicFiles objects |
| GenomicFiles-deprecated | Deprecated functions in package 'GenomicFiles' |
| GenomicFiles-method | GenomicFiles objects |
| getVCFPath | Deprecated functions in package 'GenomicFiles' |
| isPacked | Range transformations of a 'GenomicRanges' object for optimal file queries. |
| makeFileType | Functions for creating and searching a registry of file types. |
| pack | Range transformations of a 'GenomicRanges' object for optimal file queries. |
| pack-method | Range transformations of a 'GenomicRanges' object for optimal file queries. |
| paths1kg | VcfStack and RangedVcfStack Objects |
| RangedVcfStack | VcfStack and RangedVcfStack Objects |
| RangedVcfStack-class | VcfStack and RangedVcfStack Objects |
| readVcfStack | VcfStack and RangedVcfStack Objects |
| reduceByFile | Parallel computations by files |
| reduceByFile-method | Parallel computations by files |
| reduceByRange | Parallel computations by ranges |
| reduceByRange-method | Parallel computations by ranges |
| reduceByYield | Iterate through a BAM (or other) file, reducing output to a single result. |
| reduceFiles | Parallel computations by files |
| reduceRanges | Parallel computations by ranges |
| REDUCEsampler | Iterate through a BAM (or other) file, reducing output to a single result. |
| registerFileType | Functions for creating and searching a registry of file types. |
| registry-utils | Functions for creating and searching a registry of file types. |
| rownames-method | VcfStack and RangedVcfStack Objects |
| rowRanges-method | VcfStack and RangedVcfStack Objects |
| rowRanges<--method | VcfStack and RangedVcfStack Objects |
| seqinfo-method | VcfStack and RangedVcfStack Objects |
| seqinfo<--method | VcfStack and RangedVcfStack Objects |
| seqlevelsStyle<--method | VcfStack and RangedVcfStack Objects |
| show-method | GenomicFiles objects |
| show-method | VcfStack and RangedVcfStack Objects |
| unpack | Un-pack results obtained with a pack()ed group of ranges |
| unpack-method | Un-pack results obtained with a pack()ed group of ranges |
| vcfFields-method | VcfStack and RangedVcfStack Objects |
| VcfStack | VcfStack and RangedVcfStack Objects |
| VcfStack-class | VcfStack and RangedVcfStack Objects |
| [-method | GenomicFiles objects |
| [-method | VcfStack and RangedVcfStack Objects |