assay-method | VcfStack and RangedVcfStack Objects |
class:GenomicFiles | GenomicFiles objects |
class:VcfStack | VcfStack and RangedVcfStack Objects |
colData-method | VcfStack and RangedVcfStack Objects |
colData<--method | GenomicFiles objects |
colData<--method | VcfStack and RangedVcfStack Objects |
colnames-method | VcfStack and RangedVcfStack Objects |
dim-method | VcfStack and RangedVcfStack Objects |
dimnames-method | VcfStack and RangedVcfStack Objects |
dimnames<--method | GenomicFiles objects |
files | GenomicFiles objects |
files-method | GenomicFiles objects |
files-method | VcfStack and RangedVcfStack Objects |
files<- | GenomicFiles objects |
files<--method | GenomicFiles objects |
files<--method | VcfStack and RangedVcfStack Objects |
findTypeRegistry | Functions for creating and searching a registry of file types. |
GenomicFiles | GenomicFiles objects |
GenomicFiles-class | GenomicFiles objects |
GenomicFiles-deprecated | Deprecated functions in package 'GenomicFiles' |
GenomicFiles-method | GenomicFiles objects |
getVCFPath | Deprecated functions in package 'GenomicFiles' |
isPacked | Range transformations of a 'GenomicRanges' object for optimal file queries. |
makeFileType | Functions for creating and searching a registry of file types. |
pack | Range transformations of a 'GenomicRanges' object for optimal file queries. |
pack-method | Range transformations of a 'GenomicRanges' object for optimal file queries. |
paths1kg | VcfStack and RangedVcfStack Objects |
RangedVcfStack | VcfStack and RangedVcfStack Objects |
RangedVcfStack-class | VcfStack and RangedVcfStack Objects |
readVcfStack | VcfStack and RangedVcfStack Objects |
reduceByFile | Parallel computations by files |
reduceByFile-method | Parallel computations by files |
reduceByRange | Parallel computations by ranges |
reduceByRange-method | Parallel computations by ranges |
reduceByYield | Iterate through a BAM (or other) file, reducing output to a single result. |
reduceFiles | Parallel computations by files |
reduceRanges | Parallel computations by ranges |
REDUCEsampler | Iterate through a BAM (or other) file, reducing output to a single result. |
registerFileType | Functions for creating and searching a registry of file types. |
registry-utils | Functions for creating and searching a registry of file types. |
rownames-method | VcfStack and RangedVcfStack Objects |
rowRanges-method | VcfStack and RangedVcfStack Objects |
rowRanges<--method | VcfStack and RangedVcfStack Objects |
seqinfo-method | VcfStack and RangedVcfStack Objects |
seqinfo<--method | VcfStack and RangedVcfStack Objects |
seqlevelsStyle<--method | VcfStack and RangedVcfStack Objects |
show-method | GenomicFiles objects |
show-method | VcfStack and RangedVcfStack Objects |
unpack | Un-pack results obtained with a pack()ed group of ranges |
unpack-method | Un-pack results obtained with a pack()ed group of ranges |
vcfFields-method | VcfStack and RangedVcfStack Objects |
VcfStack | VcfStack and RangedVcfStack Objects |
VcfStack-class | VcfStack and RangedVcfStack Objects |
[-method | GenomicFiles objects |
[-method | VcfStack and RangedVcfStack Objects |