Distributed computing by file or by range


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Documentation for package ‘GenomicFiles’ version 1.43.0

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assay-method VcfStack and RangedVcfStack Objects
class:GenomicFiles GenomicFiles objects
class:VcfStack VcfStack and RangedVcfStack Objects
colData-method VcfStack and RangedVcfStack Objects
colData<--method GenomicFiles objects
colData<--method VcfStack and RangedVcfStack Objects
colnames-method VcfStack and RangedVcfStack Objects
dim-method VcfStack and RangedVcfStack Objects
dimnames-method VcfStack and RangedVcfStack Objects
dimnames<--method GenomicFiles objects
files GenomicFiles objects
files-method GenomicFiles objects
files-method VcfStack and RangedVcfStack Objects
files<- GenomicFiles objects
files<--method GenomicFiles objects
files<--method VcfStack and RangedVcfStack Objects
findTypeRegistry Functions for creating and searching a registry of file types.
GenomicFiles GenomicFiles objects
GenomicFiles-class GenomicFiles objects
GenomicFiles-deprecated Deprecated functions in package 'GenomicFiles'
GenomicFiles-method GenomicFiles objects
getVCFPath Deprecated functions in package 'GenomicFiles'
isPacked Range transformations of a 'GenomicRanges' object for optimal file queries.
makeFileType Functions for creating and searching a registry of file types.
pack Range transformations of a 'GenomicRanges' object for optimal file queries.
pack-method Range transformations of a 'GenomicRanges' object for optimal file queries.
paths1kg VcfStack and RangedVcfStack Objects
RangedVcfStack VcfStack and RangedVcfStack Objects
RangedVcfStack-class VcfStack and RangedVcfStack Objects
readVcfStack VcfStack and RangedVcfStack Objects
reduceByFile Parallel computations by files
reduceByFile-method Parallel computations by files
reduceByRange Parallel computations by ranges
reduceByRange-method Parallel computations by ranges
reduceByYield Iterate through a BAM (or other) file, reducing output to a single result.
reduceFiles Parallel computations by files
reduceRanges Parallel computations by ranges
REDUCEsampler Iterate through a BAM (or other) file, reducing output to a single result.
registerFileType Functions for creating and searching a registry of file types.
registry-utils Functions for creating and searching a registry of file types.
rownames-method VcfStack and RangedVcfStack Objects
rowRanges-method VcfStack and RangedVcfStack Objects
rowRanges<--method VcfStack and RangedVcfStack Objects
seqinfo-method VcfStack and RangedVcfStack Objects
seqinfo<--method VcfStack and RangedVcfStack Objects
seqlevelsStyle<--method VcfStack and RangedVcfStack Objects
show-method GenomicFiles objects
show-method VcfStack and RangedVcfStack Objects
unpack Un-pack results obtained with a pack()ed group of ranges
unpack-method Un-pack results obtained with a pack()ed group of ranges
vcfFields-method VcfStack and RangedVcfStack Objects
VcfStack VcfStack and RangedVcfStack Objects
VcfStack-class VcfStack and RangedVcfStack Objects
[-method GenomicFiles objects
[-method VcfStack and RangedVcfStack Objects