adjustClusterLabels |
Enhance spot resolution |
clusterPlot |
Plot spatial cluster assignments. |
coreTune |
Enhance spot resolution |
counts2h5 |
Load a Visium spatial dataset as a SingleCellExperiment. |
enhanceFeatures |
Predict feature vectors from enhanced PCs. |
exampleSCE |
Create minimal 'SingleCellExperiment' for documentation examples. |
featurePlot |
Plot spatial gene expression. |
getRDS |
Download a processed sample from our S3 bucket |
mcmcChain |
Read MCMC chain associated with a BayesSpace clustering or enhancement |
paraLapply |
Parallelization |
parallelize |
Parallelization |
qPlot |
Tuning the choice of q (number of clusters) before running spatialCluster |
qTune |
Tuning the choice of q (number of clusters) before running spatialCluster |
read10Xh5 |
Load a Visium spatial dataset as a SingleCellExperiment. |
readVisium |
Load a Visium spatial dataset as a SingleCellExperiment. |
removeChain |
Read MCMC chain associated with a BayesSpace clustering or enhancement |
spatialCluster |
Spatial clustering |
spatialEnhance |
Enhance spot resolution |
spatialPreprocess |
Preprocess a spatial dataset for BayesSpace |