Analysis of big data from aCGH experiments using parallel computing and ff objects

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Documentation for package ‘ADaCGH2’ version 2.47.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cutFile	Cut a file and return individual columns
inputEx	A fictitious aCGH data set
inputEx-sp	A fictitious aCGH data set
inputEx.nona	A fictitious aCGH data set
inputToADaCGH	Convert CGH data to ff or RAM objects for use with ADaCGH2
outputToCGHregions	ADaCGH2 output as input to CGHregions
pChromPlot	Segment plots for aCGH as PNG
pSegment	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentCGHseg	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentDNAcopy	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentGLAD	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHaarSeg	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHMM	Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentWavelets	Parallelized/"unified" versions of several aCGH segementation algorithms/methods