Cytometry Cluster Hierarchy and Cellular-to-phenotype
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Documentation for package ‘treekoR’ version 1.15.0
Help Pages
| addFreqBars | Title |
| addHeatMap | Title |
| addTree | Title |
| colourTree | colourTree |
| DeBiasi_COVID_CD8_samp | COVID-19 Sample data |
| findChildren | findChildren |
| geometricMean | geometricMean |
| getCellGMeans | getCellGMeans |
| getCellProp | getCellProp |
| getClusterTree | getClusterTree This function takes a CATALYST sce with clusters and creates a hierarchical tree |
| getParentProp | getParentProp |
| getTotalProp | getTotalProp |
| getTreeResults | getTreeResults |
| hopachToPhylo | hopachToPhylo |
| plotInteractiveHeatmap | Title |
| plotSigScatter | plotSigScatter |
| runEdgeRTests | runEdgeRTests |
| runGLMMTests | runGLMMTests |
| runHOPACH | runHOPACH |
| testTree | testTree |