.intensityImage | Function to estimate the intensity image of a point pattern |
.intensityThreshold | Function to estimate the intensity threshold for the reconstruction of spatial structures |
binaryImageToSF | Converts a binary matrix to an sf polygon |
estimateReconstructionParametersSPE | Estimate reconstruction parameters from a set of images |
findIntensityThreshold | Estimate the intensity threshold for the reconstruction of spatial structures |
getDimXY | Function to get the dimension based on dim of y axis |
meanShapeMetrics | Calculate mean shape metrics of a set of polygons |
normalizeCoordinates | Function to normalize coordinates between zero and one while keep scaling |
reconstructShapeDensity | Reconstruct polygon from point pattern density |
reconstructShapeDensityImage | Reconstruct structure from spe object with given image id |
reconstructShapeDensitySPE | Reconstruct structure from spatial experiment object per image id |
shapeIntensityImage | Intensity plot |
shapeMetrics | Calculate a set of shape metrics of a polygon |
SPE2ppp | Function to convert spatial coordinates of a 'SpatialExperiment' object to a 'ppp' object |
st_calculateCurvature | Title |
st_calculateShapeCurl | Calculate curl of a polygon |
st_feature_axes | Calculate the length of feature axes of an sf polygon |
totalShapeMetrics | Calculate a set of shape metrics of a set of polygons |
xyCoordinates | Function to extract x y coordinates from binary image |