Gene signature generation for functionally validated signaling pathways

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Documentation for package ‘sigsquared’ version 1.39.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

analysisPipeline	Training of thresholds
analysisPipeline-method	Class '"geneSignature"'
BrCa443	Breast Cancer 443 Data Set
ensembleAdjustable	Application of geneSignature object
ensembleAdjustable-method	Class '"geneSignature"'
geneSignature-class	Class '"geneSignature"'
getDirect	geneSignature functions
getDirect-method	Class '"geneSignature"'
getGenes	geneSignature functions
getGenes-method	Class '"geneSignature"'
getNGenes	geneSignature functions
getNGenes-method	Class '"geneSignature"'
getThresholds	geneSignature functions
getThresholds-method	Class '"geneSignature"'
setDirect	geneSignature functions
setDirect-method	Class '"geneSignature"'
setGenes	geneSignature functions
setGenes-method	Class '"geneSignature"'
setGeneSignature	geneSignature functions
setGeneSignature-method	Class '"geneSignature"'
setThresholds	geneSignature functions
setThresholds-method	Class '"geneSignature"'
sigsquared	The sigsquared package