alphaValue | ~~ Methods for Function 'alphaValue' ~~ |
alphaValue-method | ~~ Methods for Function 'alphaValue' ~~ |
alphaValue-methods | ~~ Methods for Function 'alphaValue' ~~ |
betaHats | ~~ Methods for Function 'betaHats' ~~ |
betaHats-method | ~~ Methods for Function 'betaHats' ~~ |
betaHats-methods | ~~ Methods for Function 'betaHats' ~~ |
betaStat | ~~ Methods for Function 'betaStat' ~~ |
betaStat-method | ~~ Methods for Function 'betaStat' ~~ |
betaStat-methods | ~~ Methods for Function 'betaStat' ~~ |
betaValue | ~~ Methods for Function 'betaValue' ~~ |
betaValue-method | ~~ Methods for Function 'betaValue' ~~ |
betaValue-methods | ~~ Methods for Function 'betaValue' ~~ |
chiSqStat | ~~ Methods for Function 'chiSqStat' ~~ |
chiSqStat-method | ~~ Methods for Function 'chiSqStat' ~~ |
chiSqStat-methods | ~~ Methods for Function 'chiSqStat' ~~ |
DF | ~~ Methods for Function 'DF' ~~ |
DF-method | ~~ Methods for Function 'DF' ~~ |
DF-methods | ~~ Methods for Function 'DF' ~~ |
geneSetName | ~~ Methods for Function 'geneSetName' ~~ |
geneSetName-method | ~~ Methods for Function 'geneSetName' ~~ |
geneSetName-methods | ~~ Methods for Function 'geneSetName' ~~ |
getIncidence | Determines the incidence of a gene set in a list of genes. |
npGSEA | Calculates an approximation of the permutation GSEA statistics and p-values |
npGSEAPlot | ~~ Methods for Function 'npGSEAPlot' ~~ |
npGSEAPlot-method | ~~ Methods for Function 'npGSEAPlot' ~~ |
npGSEAPlot-methods | ~~ Methods for Function 'npGSEAPlot' ~~ |
npGSEAResultBeta-class | Class '"npGSEAResultBeta"' |
npGSEAResultBetaCollection-class | Class '"npGSEAResultBetaCollection"' |
npGSEAResultChiSq-class | Class '"npGSEAResultChiSq"' |
npGSEAResultChiSqCollection-class | Class '"npGSEAResultChiSqCollection"' |
npGSEAResultNorm-class | Class '"npGSEAResultNorm"' |
npGSEAResultNormCollection-class | Class '"npGSEAResultNormCollection"' |
pLeft | ~~ Methods for Function 'pLeft' ~~ |
pLeft-method | ~~ Methods for Function 'pLeft' ~~ |
pLeft-methods | ~~ Methods for Function 'pLeft' ~~ |
pRight | ~~ Methods for Function 'pRight' ~~ |
pRight-method | ~~ Methods for Function 'pRight' ~~ |
pRight-methods | ~~ Methods for Function 'pRight' ~~ |
pTwoSided | ~~ Methods for Function 'pTwoSided' ~~ |
pTwoSided-method | ~~ Methods for Function 'pTwoSided' ~~ |
pTwoSided-methods | ~~ Methods for Function 'pTwoSided' ~~ |
pValues | ~~ Methods for Function 'pValues' ~~ |
pValues-method | ~~ Methods for Function 'pValues' ~~ |
pValues-methods | ~~ Methods for Function 'pValues' ~~ |
show | ~~ Methods for Function 'show' in Package 'base' ~~ |
show-method | ~~ Methods for Function 'show' in Package 'base' ~~ |
show-methods | ~~ Methods for Function 'show' in Package 'base' ~~ |
sigmaSq | ~~ Methods for Function 'sigmaSq' ~~ |
sigmaSq-method | ~~ Methods for Function 'sigmaSq' ~~ |
sigmaSq-methods | ~~ Methods for Function 'sigmaSq' ~~ |
stat | ~~ Methods for Function 'stat' ~~ |
stat-method | ~~ Methods for Function 'stat' ~~ |
stat-methods | ~~ Methods for Function 'stat' ~~ |
xSet | ~~ Methods for Function 'xSet' ~~ |
xSet-method | ~~ Methods for Function 'xSet' ~~ |
xSet-methods | ~~ Methods for Function 'xSet' ~~ |
zStat | ~~ Methods for Function 'zStat' ~~ |
zStat-method | ~~ Methods for Function 'zStat' ~~ |
zStat-methods | ~~ Methods for Function 'zStat' ~~ |