ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

Documentation for package ‘ncdfFlow’ version 2.53.1

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as.flowSet	convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet	Clone a ncdfFlowSet
colnames-method	Accessors compatible with those for 'flowSet'
colnames<-	Accessors compatible with those for 'flowSet'
colnames<--method	Accessors compatible with those for 'flowSet'
compensate-method	Accessors compatible with those for 'flowSet'
filter-method	Accessors compatible with those for 'flowSet'
getFileName	get the cdf file name associated with ncdfFlowSet object
getIndices	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
getIndices-method	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
initIndices	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
initIndices-method	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
keyword-method	Accessors compatible with those for 'flowSet'
keyword<--method	Accessors compatible with those for 'flowSet'
lapply-method	lapply method for ncdfFlowList
length-method	Accessors compatible with those for 'flowSet'
load_ncfs	save/load a ncdfFlowSet object to/from disk.
markernames-method	Accessors compatible with those for 'flowSet'
markernames<--method	Accessors compatible with those for 'flowSet'
ncdfFlow	ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
ncdfFlowList	a class that stores multiple ncdfFlowSet objects
ncdfFlowList-class	a class that stores multiple ncdfFlowSet objects
ncdfFlowSet	create ncdfFlowSet from flowSet
ncdfFlowSet-class	a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-method	create ncdfFlowSet from flowSet
ncfsApply	apply method for ncdfFlowSet (for internal use)
ncfsApply-method	apply method for ncdfFlowSet (for internal use)
pData-method	Accessors compatible with those for 'flowSet'
pData<--method	Accessors compatible with those for 'flowSet'
phenoData-method	Accessors compatible with those for 'flowSet'
phenoData<--method	Accessors compatible with those for 'flowSet'
rbind2-method	combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet	create ncdfFlowSet from FCS files
read.ncdfFlowset	create ncdfFlowSet from FCS files
replacement method for ncdfFlowSet	write the flow data from a 'flowFrame' to 'ncdfFlowSet' flowFrame can have less channels than ncdfFlowSet,which is used for partial updating(useful for 'normalization')
sampleNames-method	Accessors compatible with those for 'flowSet'
sampleNames<-	Accessors compatible with those for 'flowSet'
sampleNames<--method	Accessors compatible with those for 'flowSet'
save_ncfs	save/load a ncdfFlowSet object to/from disk.
show	a class for storing flow cytometry raw data in HDF5 format
show-method	a class that stores multiple ncdfFlowSet objects
show-method	a class for storing flow cytometry raw data in HDF5 format
split-method	split a 'ncdfFlowSet' object.
Subset-method	subset a ncdfFlowSet by filter
subset.ncdfFlowList	subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset.ncdfFlowSet	subset the ncdfFlowSet/ncdfFlowList based on 'pData'
transform-method	Accessors compatible with those for 'flowSet'
unlink-method	delete the cdf file associated with the ncdfFlowSet object ncdfFlowSet object is unrecoverable after cdf is deleted. So this method is usually called when ncdfFlowSet object is no longer in need.
updateIndices	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
updateIndices-method	'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
[-method	subsetting by sampleNames,channels(not for events) methods
[[-method	extract a 'flowFrame' object from 'ncdfFlowSet'
[[<--method	write the flow data from a 'flowFrame' to 'ncdfFlowSet' flowFrame can have less channels than ncdfFlowSet,which is used for partial updating(useful for 'normalization')