Single-cell RNAseq cell cluster labelling by reference
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Documentation for package ‘celaref’ version 1.25.0
Help Pages
| contrast_each_group_to_the_rest | contrast_each_group_to_the_rest |
| contrast_each_group_to_the_rest_for_norm_ma_with_limma | contrast_each_group_to_the_rest_for_norm_ma_with_limma |
| contrast_the_group_to_the_rest | contrast_the_group_to_the_rest |
| contrast_the_group_to_the_rest_with_limma_for_microarray | contrast_the_group_to_the_rest_with_limma_for_microarray |
| convert_se_gene_ids | convert_se_gene_ids |
| demo_cell_info_table | Demo cell info table |
| demo_counts_matrix | Demo count matrix |
| demo_gene_info_table | Demo gene info table |
| demo_microarray_expr | Demo microarray expression table |
| demo_microarray_sample_sheet | Demo microarray sample sheet table |
| demo_query_se | Demo query se (summarizedExperiment) |
| demo_ref_se | Demo reference se (summarizedExperiment) |
| de_table.demo_query | Demo query de table |
| de_table.demo_ref | Demo ref de table |
| find_within_match_differences | find_within_match_differences |
| get_counts_index | get_counts_index |
| get_inner_or_outer_ci | get_inner_or_outer_ci |
| get_limma_top_table_with_ci | get_limma_top_table_with_ci |
| get_matched_stepped_mwtest_res_table | get_matched_stepped_mwtest_res_table |
| get_ranking_and_test_results | get_ranking_and_test_results |
| get_rankstat_table | get_rankstat_table |
| get_reciprocal_matches | get_reciprocal_matches |
| get_stepped_pvals_str | get_stepped_pvals_str |
| get_the_up_genes_for_all_possible_groups | get_the_up_genes_for_all_possible_groups |
| get_the_up_genes_for_group | get_the_up_genes_for_group |
| get_vs_random_pval | get_vs_random_pval |
| load_dataset_10Xdata | load_dataset_10Xdata |
| load_se_from_files | load_se_from_tables |
| load_se_from_tables | load_se_from_tables |
| make_ranking_violin_plot | make_ranking_violin_plot |
| make_ref_similarity_names | make_ref_similarity_names |
| make_ref_similarity_names_for_group | make_ref_similarity_names_for_group |
| make_ref_similarity_names_using_marked | make_ref_similarity_names |
| run_pair_test_stats | run_pair_test_stats |
| subset_cells_by_group | subset_cells_by_group |
| subset_se_cells_for_group_test | subset_se_cells_for_group_test |
| trim_small_groups_and_low_expression_genes | trim_small_groups_and_low_expression_genes |