Single-cell RNAseq cell cluster labelling by reference


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Documentation for package ‘celaref’ version 1.25.0

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contrast_each_group_to_the_rest contrast_each_group_to_the_rest
contrast_each_group_to_the_rest_for_norm_ma_with_limma contrast_each_group_to_the_rest_for_norm_ma_with_limma
contrast_the_group_to_the_rest contrast_the_group_to_the_rest
contrast_the_group_to_the_rest_with_limma_for_microarray contrast_the_group_to_the_rest_with_limma_for_microarray
convert_se_gene_ids convert_se_gene_ids
demo_cell_info_table Demo cell info table
demo_counts_matrix Demo count matrix
demo_gene_info_table Demo gene info table
demo_microarray_expr Demo microarray expression table
demo_microarray_sample_sheet Demo microarray sample sheet table
demo_query_se Demo query se (summarizedExperiment)
demo_ref_se Demo reference se (summarizedExperiment)
de_table.demo_query Demo query de table
de_table.demo_ref Demo ref de table
find_within_match_differences find_within_match_differences
get_counts_index get_counts_index
get_inner_or_outer_ci get_inner_or_outer_ci
get_limma_top_table_with_ci get_limma_top_table_with_ci
get_matched_stepped_mwtest_res_table get_matched_stepped_mwtest_res_table
get_ranking_and_test_results get_ranking_and_test_results
get_rankstat_table get_rankstat_table
get_reciprocal_matches get_reciprocal_matches
get_stepped_pvals_str get_stepped_pvals_str
get_the_up_genes_for_all_possible_groups get_the_up_genes_for_all_possible_groups
get_the_up_genes_for_group get_the_up_genes_for_group
get_vs_random_pval get_vs_random_pval
load_dataset_10Xdata load_dataset_10Xdata
load_se_from_files load_se_from_tables
load_se_from_tables load_se_from_tables
make_ranking_violin_plot make_ranking_violin_plot
make_ref_similarity_names make_ref_similarity_names
make_ref_similarity_names_for_group make_ref_similarity_names_for_group
make_ref_similarity_names_using_marked make_ref_similarity_names
run_pair_test_stats run_pair_test_stats
subset_cells_by_group subset_cells_by_group
subset_se_cells_for_group_test subset_se_cells_for_group_test
trim_small_groups_and_low_expression_genes trim_small_groups_and_low_expression_genes