biomvRCNS-class |
Class '"biomvRCNS"' |
biomvRGviz |
Plot segmentation result using Gviz |
biomvRhsmm |
Estimating the most likely state sequence using Hidden Semi Markov Model |
biomvRmgmr |
Batch process multiple sequences and samples using max-gap-min-run algorithm for 2 states segmentation |
biomvRseg |
Homogeneous segmentation of multi-sample genomic data |
coriell |
Array CGH data set of Coriell cell lines |
encodeTP53 |
mapped RNA-seq data from ENCODE |
hsmmRun |
Estimating the most likely state sequence using Hidden Semi Markov Model |
maxGapminRun |
Max-gap-min-run algorithm for 2 states segmentation |
plot-method |
Class '"biomvRCNS"' |
regionSegAlphaNB |
Estimate matrix of dispersion parameter alpha (size) used in 'regionSegCost' for negative binomial distributed 'x'. |
regionSegCost |
Regional segmentation cost matrix |
show-method |
Class '"biomvRCNS"' |
simSegData |
Simulate exemplary segmentation data. |
sojournAnno |
Estimate sojourn distribution parameters from posterior information like annotation data |
splitFarNeighbour |
Split segments if long gaps exist between feature positions |
variosm |
Differential methylation data from sequencing |