Splicing Diversity Analysis for Transcriptome Data

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Documentation for package ‘SplicingFactory’ version 1.15.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calculate_difference	Calculate splicing diversity changes between two conditions.
calculate_diversity	Main function for calculating splicing diversity
calculate_entropy	Calculate entropy for a vector of transcript-level expression values of one gene.
calculate_fc	Calculate splicing diversity changes between two conditions.
calculate_gini	Calculate Gini coefficient for a vector of transcript-level expression values of one gene.
calculate_inverse_simpson	#' Calculate inverse Simpson index for a vector of transcript-level expression values of one gene.
calculate_method	Calculate diversity values for a matrix of transcripts.
calculate_simpson	#' Calculate Simpson index for a vector of transcript-level expression values of one gene.
label_shuffling	Calculate p-values using label shuffling.
tcga_brca_luma_dataset	TCGA Luminal A breast cancer dataset
wilcoxon	Calculate p-values using Wilcoxon rank sum test.