Large-scale single-cell RNA-seq data analysis using GDS files and Seurat


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Documentation for package ‘SCArray.sat’ version 1.7.0

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SCArray.sat-package Large-scale single-cell RNA-seq data analysis using GDS files and Seurat
CreateAssayObject2 Create an Assay object
GetAssayData SCArrayAssay S3 methods
GetAssayData.SCArrayAssay SCArrayAssay S3 methods
NormalizeData Normalize Count Data
NormalizeData.SC_GDSMatrix Normalize Count Data
RunPCA Run PCA
RunPCA.SCArrayAssay Run PCA
RunPCA.SC_GDSMatrix Run PCA
ScaleData Scale and Center the Data
ScaleData.SC_GDSMatrix Scale and Center the Data
SCArray.sat Large-scale single-cell RNA-seq data analysis using GDS files and Seurat
SCArrayAssay GDS-specific Assay Class
SCArrayAssay-class GDS-specific Assay Class
SCArrayAssay-methods SCArrayAssay S3 methods
scGetFiles File names for on-disk backend
scGetFiles-method File names for on-disk backend
scMemory Load Data to Memory
scMemory-method Load Data to Memory
scNewAssayGDS Create Assay Object
scNewSeuratGDS Create Seurat Object
SetAssayData SCArrayAssay S3 methods
SetAssayData.SCArrayAssay SCArrayAssay S3 methods
Seurat_g GDS-based Seurat Class
Seurat_g-class GDS-based Seurat Class
subset SCArrayAssay S3 methods
subset.SCArrayAssay SCArrayAssay S3 methods