Maximum Likelihood Decay Modeling of RNA Degradation Data

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Documentation for package ‘RNAdecay’ version 1.27.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

a_high	calculates bounds for modeled parameters
a_low	calculates bounds for modeled parameters
b_low	calculates bounds for modeled parameters
cols	Indexes column names of a data.frame matching multiple patterns (i.e., multigrep)
const_decay	exponential decay functions
decaying_decay	exponential decay functions
decay_data	Normalized RNA abundance RNA decay timecourse
decay_plot	decay_plot() function
groupings	Combinatorial groups matrix generator
group_map	model color map
hl_plot	hl_plot() function
models	Example double exponential decay modeling results
mod_optimization	model optimization for fitting exponential decay models to normalized data
plain_theme	a custom ggplot2 theme
results	Example double exponential decay modeling results
RPMs	RNA abundance reads per million over RNA decay timecourse