Type: Package
Package: PhosR
Title: A Set of Methods and Tools for Comprehensive Analysis of
        Phosphoproteomics Data
Version: 1.18.5
Authors@R: c(
    person("Di", "Xiao", , "di.xiao@sydney.edu.au", role = c("aut", "cre")),
    person("Pengyi", "Yang", , "pengyi.yang@sydney.edu.au", role = "aut"),
    person("Hani Jieun", "Kim", , "jieun.kim@sydney.edu.au", role = "aut")
  )
Description: Comprehensive analysis of phosphoproteomics data. Provides
    methods and tools for filtering, imputation, normalisation, and
    downstream functional analysis to infer active kinases and signalling
    pathways.
License: GPL-3 + file LICENSE
URL: https://bioconductor.org/packages/PhosR,
        https://github.com/PYangLab/PhosR
BugReports: https://github.com/PYangLab/PhosR/issues
Depends: R (>= 4.3.0)
Imports: BiocGenerics, circlize, dendextend, dplyr, e1071, GGally,
        ggdendro, ggplot2, ggpubr, ggtext, graphics, grDevices, igraph,
        limma, methods, network, pcaMethods, pheatmap, preprocessCore,
        RColorBrewer, reshape2, rlang, ruv, S4Vectors, stats, stringi,
        SummarizedExperiment, tidyr, utils
Suggests: annotate, BiocStyle, calibrate, ClueR, directPA, knitr,
        org.Mm.eg.db, org.Rn.eg.db, reactome.db, rgl, rmarkdown, sna,
        stringr, testthat
VignetteBuilder: knitr
biocViews: Software, ResearchField, Proteomics, Pathways
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.2.2
git_url: https://git.bioconductor.org/packages/PhosR
git_branch: RELEASE_3_21
git_last_commit: 4c02896
git_last_commit_date: 2025-09-16
Repository: Bioconductor 3.21
Date/Publication: 2025-09-18
NeedsCompilation: no
Packaged: 2025-09-19 11:10:43 UTC; biocbuild
Author: Di Xiao [aut, cre],
  Pengyi Yang [aut],
  Hani Jieun Kim [aut]
Maintainer: Di Xiao <di.xiao@sydney.edu.au>
Built: R 4.5.1; ; 2025-09-20 22:40:28 UTC; unix
