A B C D E F G H I K L M N P R S U misc
Pedixplorer-package | The Pedixplorer package for pedigree data |
adopted | Ped object |
adopted-method | Ped object |
adopted<- | Ped object |
adopted<--method | Ped object |
affected | Ped object |
affected-method | Ped object |
affected<- | Ped object |
affected<--method | Ped object |
align | Align a Pedigree object |
align-method | Align a Pedigree object |
alignped1 | Alignment first routine |
alignped2 | Alignment second routine |
alignped3 | Alignment third routine |
alignped4 | Alignment fourth routine |
as.data.frame-method | Ped object |
as.data.frame-method | Rel object |
as.list-method | Hints object |
as.list-method | Ped object |
as.list-method | Pedigree object |
as.list-method | Rel object |
as.list-method | Scales object |
asymptomatic | Ped object |
asymptomatic-method | Ped object |
asymptomatic<- | Ped object |
asymptomatic<--method | Ped object |
auto_hint | Initial hint for a Pedigree alignment |
auto_hint-method | Initial hint for a Pedigree alignment |
avail | Ped object |
avail-method | Ped object |
avail<- | Ped object |
avail<--method | Ped object |
best_hint | Best hint for a Pedigree alignment |
best_hint-method | Best hint for a Pedigree alignment |
bit_size | Bit size of a Pedigree |
bit_size-method | Bit size of a Pedigree |
border | Scales object |
border-method | Pedigree object |
border-method | Scales object |
border<- | Scales object |
border<--method | Pedigree object |
border<--method | Scales object |
carrier | Ped object |
carrier-method | Ped object |
carrier<- | Ped object |
carrier<--method | Ped object |
code | Rel object |
code-method | Rel object |
consultand | Ped object |
consultand-method | Ped object |
consultand<- | Ped object |
consultand<--method | Ped object |
dadid | Ped object |
dadid-method | Ped object |
dadid<- | Ped object |
dadid<--method | Ped object |
dateofbirth | Ped object |
dateofbirth-method | Ped object |
dateofbirth<- | Ped object |
dateofbirth<--method | Ped object |
dateofdeath | Ped object |
dateofdeath-method | Ped object |
dateofdeath<- | Ped object |
dateofdeath<--method | Ped object |
deceased | Ped object |
deceased-method | Ped object |
deceased<- | Ped object |
deceased<--method | Ped object |
evaluated | Ped object |
evaluated-method | Ped object |
evaluated<- | Ped object |
evaluated<--method | Ped object |
famid | Ped object |
famid-method | Ped object |
famid-method | Rel object |
famid<- | Ped object |
famid<--method | Ped object |
famid<--method | Rel object |
family_infos_table | Affection and availability information table |
fertility | Ped object |
fertility-method | Ped object |
fertility<- | Ped object |
fertility<--method | Ped object |
fill | Scales object |
fill-method | Pedigree object |
fill-method | Scales object |
fill<- | Scales object |
fill<--method | Pedigree object |
fill<--method | Scales object |
find_avail_affected | Find single affected and available individual from a Pedigree |
find_avail_affected-method | Find single affected and available individual from a Pedigree |
find_avail_noninform | Find uninformative but available subject |
find_avail_noninform-method | Find uninformative but available subject |
find_unavailable | Find unavailable subjects in a Pedigree |
find_unavailable-method | Find unavailable subjects in a Pedigree |
fix_parents | Fix parents relationship and gender |
fix_parents-method | Fix parents relationship and gender |
generate_colors | Process the filling and border colors based on affection and availability |
generate_colors-method | Process the filling and border colors based on affection and availability |
Hints | Hints object |
hints | Pedigree object |
Hints-class | Hints object |
Hints-method | Hints object |
hints-method | Pedigree object |
hints<- | Pedigree object |
hints<--method | Pedigree object |
horder | Hints object |
horder-method | Hints object |
horder-method | Pedigree object |
horder<- | Hints object |
horder<--method | Hints object |
horder<--method | Pedigree object |
ibd_matrix | IBD matrix |
id | Ped object |
id-method | Ped object |
id1 | Rel object |
id1-method | Rel object |
id2 | Rel object |
id2-method | Rel object |
id<- | Ped object |
id<--method | Ped object |
isinf | Ped object |
isinf-method | Ped object |
isinf<- | Ped object |
isinf<--method | Ped object |
is_informative | Find informative individuals |
is_informative-method | Find informative individuals |
is_parent | Are individuals parents |
is_parent-method | Are individuals parents |
kin | Ped object |
kin-method | Ped object |
kin<- | Ped object |
kin<--method | Ped object |
kindepth | Individual's depth in a pedigree |
kindepth-method | Individual's depth in a pedigree |
kinship | Kinship matrix |
kinship-method | Kinship matrix |
length-method | Pedigree object |
make_famid | Compute family id |
make_famid-method | Compute family id |
mcols-method | Pedigree object |
mcols<--method | Ped object |
mcols<--method | Pedigree object |
minnbreast | Minnesota Breast Cancer Study |
min_dist_inf | Minimum distance to the informative individuals |
min_dist_inf-method | Minimum distance to the informative individuals |
miscarriage | Ped object |
miscarriage-method | Ped object |
miscarriage<- | Ped object |
miscarriage<--method | Ped object |
momid | Ped object |
momid-method | Ped object |
momid<- | Ped object |
momid<--method | Ped object |
norm_ped | Normalise a Ped object dataframe |
norm_rel | Normalise a Rel object dataframe |
num_child | Number of childs |
num_child-method | Number of childs |
parent_of | Get parents of individuals |
parent_of-method | Get parents of individuals |
Ped | Ped object |
ped | Pedigree object |
Ped-class | Ped object |
Ped-method | Ped object |
ped-method | Pedigree object |
ped<- | Pedigree object |
ped<--method | Pedigree object |
Pedigree | Pedigree object |
Pedigree-class | Pedigree object |
Pedigree-method | Pedigree object |
Pedixplorer | The Pedixplorer package for pedigree data |
ped_shiny | Run Pedixplorer Shiny application |
ped_to_legdf | Create plotting legend data frame from a Pedigree |
ped_to_legdf-method | Create plotting legend data frame from a Pedigree |
ped_to_plotdf | Create plotting data frame from a Pedigree |
ped_to_plotdf-method | Create plotting data frame from a Pedigree |
plot,Pedigree | Plot Pedigrees |
plot-method | Plot Pedigrees |
plot.Pedigree | Plot Pedigrees |
plot_fromdf | Create a plot from a data.frame |
proband | Ped object |
proband-method | Ped object |
proband<- | Ped object |
proband<--method | Ped object |
Rel | Rel object |
rel | Pedigree object |
Rel-class | Rel object |
Rel-method | Rel object |
rel-method | Pedigree object |
rel<- | Pedigree object |
rel<--method | Pedigree object |
relped | Relped data |
sampleped | Sampleped data |
Scales | Scales object |
scales | Pedigree object |
Scales-class | Scales object |
Scales-method | Scales object |
scales-method | Pedigree object |
scales<- | Pedigree object |
scales<--method | Pedigree object |
sex | Ped object |
sex-method | Ped object |
sex<- | Ped object |
sex<--method | Ped object |
show-method | Ped object |
show-method | Pedigree object |
show-method | Rel object |
shrink | Shrink Pedigree object |
shrink-method | Shrink Pedigree object |
spouse | Hints object |
spouse-method | Hints object |
spouse-method | Pedigree object |
spouse<- | Pedigree object |
spouse<--method | Hints object |
spouse<--method | Pedigree object |
subset-method | Hints object |
subset-method | Ped object |
subset-method | Pedigree object |
subset-method | Rel object |
summary-method | Ped object |
summary-method | Pedigree object |
summary-method | Rel object |
unrelated | Find Unrelated subjects |
unrelated-method | Find Unrelated subjects |
upd_famid | Update family prefix in individuals id |
upd_famid-method | Update family prefix in individuals id |
useful | Ped object |
useful-method | Ped object |
useful<- | Ped object |
useful<--method | Ped object |
useful_inds | Usefulness of individuals |
useful_inds-method | Usefulness of individuals |
[-method | Pedigree object |