High-quality circular visualization of omics data
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Documentation for package ‘OmicCircos’ version 1.45.0
- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
Help Pages
| circos | draw circular |
| OmicCircos | OmicCircos package |
| segAnglePo | generate circular skeleton data from user's mapping data |
| segAnglePo-method | ~~ Methods for Function 'segAnglePo' ~~ |
| segAnglePo-methods | ~~ Methods for Function 'segAnglePo' ~~ |
| sim.circos | circular data simulation |
| TCGA.BC.cnv.2k.60 | copy number data of TCGA Breast Cancer |
| TCGA.BC.fus | TCGA Breast Cancer gene fusion data. |
| TCGA.BC.gene.exp.2k.60 | TCGA BRCA expression data |
| TCGA.BC.sample60 | TCGA BRCA Sample names and subtypes |
| TCGA.BC_Her2_cnv_exp | TCGA BRCA expression and cnv association |
| TCGA.PAM50_genefu_hg18 | BRCA PAM50 gene list (hg18) |
| UCSC.chr.colors | chromosome banding colors |
| UCSC.hg18 | human hg18 circumference coordinates |
| UCSC.hg18.chr | human hg18 segment data. |
| UCSC.hg19 | human hg19 circumference coordinates |
| UCSC.hg19.chr | human hg19 segment data |
| UCSC.mm10 | mouse mm10 circumference coordinates |
| UCSC.mm10.chr | mouse mm10 segment data. |
| UCSC.mm9 | mouse mm9 circumference coordinates |
| UCSC.mm9.chr | mouse mm9 segment data. |