Epigenetic Dissection of Intra-Sample-Heterogeneity

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Documentation for package ‘EpiDISH’ version 2.23.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

CellDMC	A function that allows the identification of differentially methylated cell-types in in Epigenome-Wide Association Studies(EWAS)
cent12CT.m	Whole blood reference of 12 blood cell subtypes for EPIC array
cent12CT450k.m	Whole blood reference of 12 blood cell subtypes for 450k array
centBloodSub.m	Whole blood reference of 188 tsDHS-DMCs and 7 blood cell subtypes
centDHSbloodDMC.m	Whole blood reference of 333 tsDHS-DMCs and 7 blood cell subtypes
centEpiFibFatIC.m	Reference for breast tissue
centEpiFibIC.m	Reference for genenric epithelial tissue
centUniLIFE.m	DNAm reference matrix for 19 immune cell-types for blood of any age
DoMetaEfron	An R-function to perform a meta-analysis over multiple studies using an empirical Bayes procedure by Efron followed by Stouffer method.
DummyBeta.m	Dummy beta value matrix
epidish	Epigenetic Dissection of Intra-Sample-Heterogeneity
hepidish	Hierarchical EpiDISH (HEpiDISH)
LiuDataSub.m	Whole blood example beta value matrix