This vignette provides links to videos demonstrating some of the functionalities of CytoPipeline R package suite. It is distributed, as well as the accompanying videos, under a CC BY-SA license.
CytoPipeline 1.7.0
## R Under development (unstable) (2024-11-20 r87352)
## Platform: aarch64-apple-darwin20
## Running under: macOS Ventura 13.7.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
##
## locale:
## [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/New_York
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] patchwork_1.3.0 CytoPipelineGUI_1.5.0 CytoPipeline_1.7.0
## [4] BiocStyle_2.35.0
##
## loaded via a namespace (and not attached):
## [1] DBI_1.2.3 gridExtra_2.3 rlang_1.1.4
## [4] magrittr_2.0.3 clue_0.3-66 GetoptLong_1.0.5
## [7] matrixStats_1.4.1 compiler_4.5.0 RSQLite_2.3.8
## [10] png_0.1-8 vctrs_0.6.5 reshape2_1.4.4
## [13] stringr_1.5.1 pkgconfig_2.0.3 shape_1.4.6.1
## [16] crayon_1.5.3 fastmap_1.2.0 magick_2.8.5
## [19] dbplyr_2.5.0 labeling_0.4.3 utf8_1.2.4
## [22] promises_1.3.0 ncdfFlow_2.53.0 rmarkdown_2.29
## [25] graph_1.85.0 tinytex_0.54 purrr_1.0.2
## [28] bit_4.5.0 xfun_0.49 zlibbioc_1.53.0
## [31] cachem_1.1.0 jsonlite_1.8.9 flowWorkspace_4.19.0
## [34] blob_1.2.4 later_1.3.2 parallel_4.5.0
## [37] cluster_2.1.6 R6_2.5.1 bslib_0.8.0
## [40] stringi_1.8.4 RColorBrewer_1.1-3 jquerylib_0.1.4
## [43] Rcpp_1.0.13-1 bookdown_0.41 iterators_1.0.14
## [46] knitr_1.49 zoo_1.8-12 IRanges_2.41.1
## [49] flowCore_2.19.0 httpuv_1.6.15 tidyselect_1.2.1
## [52] yaml_2.3.10 doParallel_1.0.17 codetools_0.2-20
## [55] curl_6.0.1 lattice_0.22-6 tibble_3.2.1
## [58] plyr_1.8.9 Biobase_2.67.0 shiny_1.9.1
## [61] withr_3.0.2 evaluate_1.0.1 BiocFileCache_2.15.0
## [64] circlize_0.4.16 pillar_1.9.0 BiocManager_1.30.25
## [67] filelock_1.0.3 foreach_1.5.2 flowAI_1.37.0
## [70] stats4_4.5.0 generics_0.1.3 diagram_1.6.5
## [73] S4Vectors_0.45.2 ggplot2_3.5.1 munsell_0.5.1
## [76] ggcyto_1.35.0 scales_1.3.0 xtable_1.8-4
## [79] PeacoQC_1.17.0 glue_1.8.0 changepoint_2.3
## [82] tools_4.5.0 hexbin_1.28.5 data.table_1.16.2
## [85] XML_3.99-0.17 grid_4.5.0 RProtoBufLib_2.19.0
## [88] colorspace_2.1-1 cli_3.6.3 fansi_1.0.6
## [91] cytolib_2.19.0 ComplexHeatmap_2.23.0 dplyr_1.1.4
## [94] Rgraphviz_2.51.0 gtable_0.3.6 sass_0.4.9
## [97] digest_0.6.37 BiocGenerics_0.53.3 rjson_0.2.23
## [100] farver_2.1.2 memoise_2.0.1 htmltools_0.5.8.1
## [103] lifecycle_1.0.4 httr_1.4.7 GlobalOptions_0.1.2
## [106] mime_0.12 bit64_4.5.2