ChIPexoQual
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Documentation for package ‘ChIPexoQual’ version 1.31.0
Help Pages
| ARCvURCplot | ARCvURCplot |
| beta1 | beta1 methods |
| beta1-method | beta1 methods |
| beta2 | beta2 methods |
| beta2-method | beta2 methods |
| blacklists | 'list' of 'GRanges' objects with the blacklists generated by the ENCODE and modENCODE projects. |
| calculateParamDist | calculateParamDist 'calculateParamDist' calculates the quality parameters of one iteration. This function samples 'nregions' rows from the stat matrix and fits the linear model 'lm(d ~ 0 + u + w)' |
| ExoData | ExoData object and constructors |
| ExoData-class | ExoData object and constructors |
| ExoDataBlacklist | ExoDataBlacklist |
| ExoDataSubsampling | ExoDataSubsampling |
| exoExample | 'ExoData' results for FoxA1 ChIP-exo experiment |
| formatRegions | formatRegions 'formatRegions' separates the width, depth and uniquePos summary statistics from the 'ExoData' object to calculate the quality parameters/ |
| FSRDistplot | FSRDistplot |
| MAplot | MAplot |
| nreads | nreads methods |
| nreads-method | nreads methods |
| paramDist | paramDist methods |
| paramDist-method | paramDist methods |
| paramDistBoxplot | paramDistBoxplot |
| regionCompplot | regionCompplot |