ChIPexoQual


[Up] [Top]

Documentation for package ‘ChIPexoQual’ version 1.31.0

Help Pages

ARCvURCplot ARCvURCplot
beta1 beta1 methods
beta1-method beta1 methods
beta2 beta2 methods
beta2-method beta2 methods
blacklists 'list' of 'GRanges' objects with the blacklists generated by the ENCODE and modENCODE projects.
calculateParamDist calculateParamDist 'calculateParamDist' calculates the quality parameters of one iteration. This function samples 'nregions' rows from the stat matrix and fits the linear model 'lm(d ~ 0 + u + w)'
ExoData ExoData object and constructors
ExoData-class ExoData object and constructors
ExoDataBlacklist ExoDataBlacklist
ExoDataSubsampling ExoDataSubsampling
exoExample 'ExoData' results for FoxA1 ChIP-exo experiment
formatRegions formatRegions 'formatRegions' separates the width, depth and uniquePos summary statistics from the 'ExoData' object to calculate the quality parameters/
FSRDistplot FSRDistplot
MAplot MAplot
nreads nreads methods
nreads-method nreads methods
paramDist paramDist methods
paramDist-method paramDist methods
paramDistBoxplot paramDistBoxplot
regionCompplot regionCompplot