ARCvURCplot | ARCvURCplot |
beta1 | beta1 methods |
beta1-method | beta1 methods |
beta2 | beta2 methods |
beta2-method | beta2 methods |
blacklists | 'list' of 'GRanges' objects with the blacklists generated by the ENCODE and modENCODE projects. |
calculateParamDist | calculateParamDist 'calculateParamDist' calculates the quality parameters of one iteration. This function samples 'nregions' rows from the stat matrix and fits the linear model 'lm(d ~ 0 + u + w)' |
ExoData | ExoData object and constructors |
ExoData-class | ExoData object and constructors |
ExoDataBlacklist | ExoDataBlacklist |
ExoDataSubsampling | ExoDataSubsampling |
exoExample | 'ExoData' results for FoxA1 ChIP-exo experiment |
formatRegions | formatRegions 'formatRegions' separates the width, depth and uniquePos summary statistics from the 'ExoData' object to calculate the quality parameters/ |
FSRDistplot | FSRDistplot |
MAplot | MAplot |
nreads | nreads methods |
nreads-method | nreads methods |
paramDist | paramDist methods |
paramDist-method | paramDist methods |
paramDistBoxplot | paramDistBoxplot |
regionCompplot | regionCompplot |