Package: BgeeCall
Type: Package
Title: Automatic RNA-Seq present/absent gene expression calls
        generation
Version: 1.24.0
Date: 2021-05
Authors@R: 
	c(person("Julien", "Wollbrett", 
		role = c("aut", "cre"), 
		email = "julien.wollbrett@unil.ch"),
    person("Sara", "Fonseca Costa", role = "aut"),
    person("Julien", "Roux", role = "aut"),
    person("Marc", "Robinson Rechavi", role = "ctb"),
    person("Frederic", "Bastian", role = "aut"))
Description: BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. 
    Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq 
    libraries of each species integrated in Bgee (https://bgee.org).
Depends: R (>= 3.6)
Imports: GenomicFeatures, tximport, Biostrings, rtracklayer, biomaRt,
        jsonlite, methods, dplyr, data.table, sjmisc, grDevices,
        graphics, stats, utils, rslurm, rhdf5, txdbmaker
License: GPL-3 + file LICENSE
URL: https://github.com/BgeeDB/BgeeCall
BugReports: https://github.com/BgeeDB/BgeeCall/issues
VignetteBuilder: knitr
biocViews: Software, GeneExpression, RNASeq
Suggests: knitr, testthat, rmarkdown, AnnotationHub, httr
RoxygenNote: 7.1.1
Encoding: UTF-8
NeedsCompilation: no
SystemRequirements: kallisto
git_url: https://git.bioconductor.org/packages/BgeeCall
git_branch: RELEASE_3_21
git_last_commit: b597e29
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-15 20:54:35 UTC; biocbuild
Author: Julien Wollbrett [aut, cre],
  Sara Fonseca Costa [aut],
  Julien Roux [aut],
  Marc Robinson Rechavi [ctb],
  Frederic Bastian [aut]
Maintainer: Julien Wollbrett <julien.wollbrett@unil.ch>
Built: R 4.5.0; ; 2025-04-16 03:41:49 UTC; unix
