BSgenome.Hsapiens.UCSC.hg38
This is the released version of BSgenome.Hsapiens.UCSC.hg38; for the devel version, see BSgenome.Hsapiens.UCSC.hg38.
Full genomic sequences for Homo sapiens (UCSC genome hg38)
Bioconductor version: Release (3.20)
Full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are stored in DNAString objects.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("BSgenome.Hsapiens.UCSC.hg38")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, BSgenome, Genetics, Homo_sapiens |
| Version | 1.4.5 |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), GenomeInfoDb(>= 1.34.9), BSgenome(>= 1.66.2) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | BSgenome.Hsapiens.UCSC.hg38.masked |
| Imports Me | ORFhunteR, branchpointer, cfDNAPro, epiregulon, katdetectr, musicatk, primirTSS, OHCA, revert |
| Suggests Me | BSgenome, BUSpaRse, CNEr, ChIPpeakAnno, CleanUpRNAseq, DegCre, EpiCompare, EpiTxDb, GRaNIE, GUIDEseq, GenVisR, GenomicRanges, GenomicScores, HiCDCPlus, MIRit, Motif2Site, RAIDS, REMP, SCOPE, TAPseq, Ularcirc, XNAString, bsseq, circRNAprofiler, crisprBowtie, crisprBwa, crisprDesign, crisprShiny, crisprViz, eisaR, enhancerHomologSearch, motifbreakR, multicrispr, nullranges, periodicDNA, pqsfinder, scanMiRApp, signeR, supersigs, transmogR, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, ICAMS, MicroSEC, simMP |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/ |
| Package Downloads Report | Download Stats |