microbiome

This is the released version of microbiome; for the devel version, see microbiome.

Microbiome Analytics

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("microbiome")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

microbiome R package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Details

biocViews	Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version	1.28.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	BSD_2_clause + file LICENSE
Depends	R (>= 3.6.0), phyloseq, ggplot2
Imports	Biostrings, compositions, dplyr, reshape2, Rtsne, scales, stats, tibble, tidyr, utils, vegan
System Requirements
URL	http://microbiome.github.io/microbiome
Bug Reports	https://github.com/microbiome/microbiome/issues

See More

Suggests	BiocGenerics, BiocStyle, Cairo, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me	MicrobiomeSurv
Suggests Me	ANCOMBC, dar, zitools
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	microbiome_1.28.0.tar.gz
Windows Binary (x86_64)	microbiome_1.28.0.zip
macOS Binary (x86_64)	microbiome_1.28.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiome
Bioc Package Browser	https://code.bioconductor.org/browse/microbiome/
Package Short Url	https://bioconductor.org/packages/microbiome/
Package Downloads Report	Download Stats