DELocal

This is the released version of DELocal; for the devel version, see DELocal.

Identifies differentially expressed genes with respect to other local genes

Bioconductor version: Release (3.20)

The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.

Author: Rishi Das Roy [aut, cre]

Maintainer: Rishi Das Roy <rishi.dasroy at gmail.com>

Citation (from within R, enter citation("DELocal")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DELocal")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DELocal")

DELocal	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics
Version	1.6.0
In Bioconductor since	BioC 3.17 (R-4.3) (1.5 years)
License	MIT + file LICENSE
Depends
Imports	DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats
System Requirements
URL	https://github.com/dasroy/DELocal
Bug Reports	https://github.com/dasroy/DELocal/issues

Suggests	biomaRt, knitr, rmarkdown, stringr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	broadSeq
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DELocal_1.6.0.tar.gz
Windows Binary (x86_64)	DELocal_1.6.0.zip (64-bit only)
macOS Binary (x86_64)	DELocal_1.6.0.tgz
macOS Binary (arm64)	DELocal_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DELocal
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DELocal
Bioc Package Browser	https://code.bioconductor.org/browse/DELocal/
Package Short Url	https://bioconductor.org/packages/DELocal/
Package Downloads Report	Download Stats