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BaseSpaceR

This is the released version of BaseSpaceR; for the devel version, see BaseSpaceR.

R SDK for BaseSpace RESTful API


Bioconductor version: Release (3.20)

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")
BaseSpaceR PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.50.0
In Bioconductor since BioC 2.12 (R-3.0) (11.5 years)
License Apache License 2.0
Depends R (>= 2.15.0), RCurl, RJSONIO
Imports methods
System Requirements
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Suggests RUnit, IRanges, Rsamtools
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BaseSpaceR_1.50.0.tar.gz
Windows Binary (x86_64) BaseSpaceR_1.50.0.zip
macOS Binary (x86_64) BaseSpaceR_1.50.0.tgz
macOS Binary (arm64) BaseSpaceR_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BaseSpaceR
Bioc Package Browser https://code.bioconductor.org/browse/BaseSpaceR/
Package Short Url https://bioconductor.org/packages/BaseSpaceR/
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