topdownr-package | Investigation of Fragmentation Conditions in Top-Down Proteomics |
$-method | The AbstractTopDownSet class |
$<--method | The AbstractTopDownSet class |
AbstractTopDownSet-class | The AbstractTopDownSet class |
aggregate-method | The TopDownSet class |
assayData-method | The AbstractTopDownSet class |
bestConditions | The NCBSet class |
bestConditions-method | The NCBSet class |
coerce-method | The FragmentViews class |
coerce-method | The TopDownSet class |
colData | The AbstractTopDownSet class |
colData-method | The AbstractTopDownSet class |
colData<- | The AbstractTopDownSet class |
colData<--method | The AbstractTopDownSet class |
combine | The AbstractTopDownSet class |
combine-method | The AbstractTopDownSet class |
combine-method | The FragmentViews class |
combine-method | The TopDownSet class |
conditionData | The AbstractTopDownSet class |
conditionData-method | The AbstractTopDownSet class |
conditionData<- | The AbstractTopDownSet class |
conditionData<--method | The AbstractTopDownSet class |
conditionNames | The AbstractTopDownSet class |
conditionNames-method | The AbstractTopDownSet class |
createExperimentsFragmentOptimisation | Create fragment optimisation experiment |
createTngFusionMethFiles | Windows specific functions. |
dim-method | The AbstractTopDownSet class |
dimnames-method | The AbstractTopDownSet class |
expandMs1Conditions | Expand MS Conditions |
expandTms2Conditions | Expand MS Conditions |
filterCv | The TopDownSet class |
filterCv-method | The TopDownSet class |
filterInjectionTime | The TopDownSet class |
filterInjectionTime-method | The TopDownSet class |
filterIntensity | The TopDownSet class |
filterIntensity-method | The TopDownSet class |
filterNonReplicatedFragments | The TopDownSet class |
filterNonReplicatedFragments-method | The TopDownSet class |
fragmentationMap | The NCBSet class |
fragmentationMap-method | The NCBSet class |
FragmentViews | The FragmentViews class |
FragmentViews-class | The FragmentViews class |
mz-method | The FragmentViews class |
NCBSet-class | The NCBSet class |
normalize-method | The TopDownSet class |
plot-method | The TopDownSet class |
readTopDownFiles | Read top-down files. |
removeEmptyConditions | The AbstractTopDownSet class |
removeEmptyConditions-method | The AbstractTopDownSet class |
rowViews | The AbstractTopDownSet class |
rowViews-method | The AbstractTopDownSet class |
runScanHeadsman | Windows specific functions. |
runXmlMethodChanger | Windows specific functions. |
show-method | The AbstractTopDownSet class |
show-method | The FragmentViews class |
show-method | The NCBSet class |
show-method | The TopDownSet class |
summary-method | The AbstractTopDownSet class |
summary-method | The NCBSet class |
summary-method | The TopDownSet class |
tds | TopDownSet Example Data |
topdownr | Investigation of Fragmentation Conditions in Top-Down Proteomics |
topdownr-deprecated | Deprecated functions in topdownr |
TopDownSet-class | The TopDownSet class |
updateConditionNames | The AbstractTopDownSet class |
updateConditionNames-method | The AbstractTopDownSet class |
updateMedianInjectionTime | The AbstractTopDownSet class |
updateMedianInjectionTime-method | The AbstractTopDownSet class |
validMs1Settings | List valid MS settings. |
validTms2Settings | List valid MS settings. |
writeMethodXmls | Create Orbitrap Fusion Lumos method.xml files. |
[-method | The AbstractTopDownSet class |
[[-method | The AbstractTopDownSet class |
[[<--method | The AbstractTopDownSet class |