Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates

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Documentation for package ‘swfdr’ version 1.32.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BMI_GIANT_GWAS_sample	Subset of SNPs from meta-analysis of BMI GWAS study.
calculateSwfdr	Calculate the science-wise FDR (swfdr)
get_number_decimals	Get number of decimals (i.e. return total number of digits after decimal point) for any vector of numbers in [0,1) if number of decimals <= 6
journals_pVals	P-values from abstracts from articles in 5 biomedical journals (American Journal of Epidemiology, BMJ, JAMA, Lancet, New England Journal of Medicine), over 11 years (2000-2010).
lm_pi0	Estimation of pi0, proportion of p-values consistent with a null hypothesis
lm_qvalue	Estimation of qvalues conditioned on covariates