Sequence logos for DNA sequence alignments


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Documentation for package ‘seqLogo’ version 1.72.0

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alphabet An S4 class to represent a PWM matrix.
consensus An S4 class to represent a PWM matrix.
consensus-method An S4 class to represent a PWM matrix.
ic An S4 class to represent a PWM matrix.
ic-method An S4 class to represent a PWM matrix.
makePWM Constructing a pwm object
plot-method An S4 class to represent a PWM matrix.
pwm An S4 class to represent a PWM matrix.
pwm-class An S4 class to represent a PWM matrix.
pwm-method An S4 class to represent a PWM matrix.
seqLogo Plot a sequence logo for a given position weight matrix
show-method An S4 class to represent a PWM matrix.
summary-method An S4 class to represent a PWM matrix.