Cell type annotation for unannotated single-cell RNA-Seq data

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Documentation for package ‘scTGIF’ version 1.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

scTGIF-package	Cell type annotation for unannotated single-cell RNA-Seq data
calcTGIF	Function for connecting cellular patterns and functional patterns using jNMF
calcTGIF-method	Function for connecting cellular patterns and functional patterns using jNMF
cellMarkerToGmt	A function to convert the CellMarker data to GMT files.
convertRowID	A function to change the row names of a matrix.
DistalLungEpithelium	Gene expression matrix of DistalLungEpithelium dataset containing five cluster.
label.DistalLungEpithelium	Cellular label of DistalLungEpithelium dataset containing five cluster.
pca.DistalLungEpithelium	The result of PCA of the DistalLungEpithelium dataset.
reportTGIF	Function for reporting the result of 'calcTGIF' function
reportTGIF-method	Function for reporting the result of 'calcTGIF' function
scTGIF	Cell type annotation for unannotated single-cell RNA-Seq data
settingTGIF	Paramter setting for scTGIF
settingTGIF-method	Paramter setting for scTGIF