Tools for Sanger Sequencing Data in R

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Documentation for package ‘sangerseqR’ version 1.41.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

sangerseqR-package	Tools for Sanger Sequencing Data in R
abif	ABIF Class Objects
abif-class	ABIF Class Objects
chromatogram	Generate Chromatogram
chromatogram-method	Generate Chromatogram
makeBaseCalls	Make Basecalls
makeBaseCalls-method	Make Basecalls
peakAmpMatrix	Sangerseq Accessor Functions
peakAmpMatrix-method	Sangerseq Accessor Functions
peakAmpMatrix<-	Sangerseq Accessor Functions
peakAmpMatrix<--method	Sangerseq Accessor Functions
peakPosMatrix	Sangerseq Accessor Functions
peakPosMatrix-method	Sangerseq Accessor Functions
peakPosMatrix<-	Sangerseq Accessor Functions
peakPosMatrix<--method	Sangerseq Accessor Functions
PolyPeakParser	Run Poly Peak Parser
primarySeq	Sangerseq Accessor Functions
primarySeq-method	Sangerseq Accessor Functions
primarySeq<-	Sangerseq Accessor Functions
primarySeq<--method	Sangerseq Accessor Functions
primarySeqID	Sangerseq Accessor Functions
primarySeqID-method	Sangerseq Accessor Functions
primarySeqID<-	Sangerseq Accessor Functions
primarySeqID<--method	Sangerseq Accessor Functions
read.abif	Read ABIF Files
read.scf	Read Scf Files
readsangerseq	Read Scf or ABIF Files
sangerseq	Sangerseq Class Objects
sangerseq-class	Sangerseq Class Objects
sangerseq-method	Sangerseq Class Objects
sangerseqR	Tools for Sanger Sequencing Data in R
scf	Scf Class Objects
scf-class	Scf Class Objects
secondarySeq	Sangerseq Accessor Functions
secondarySeq-method	Sangerseq Accessor Functions
secondarySeq<-	Sangerseq Accessor Functions
secondarySeq<--method	Sangerseq Accessor Functions
secondarySeqID	Sangerseq Accessor Functions
secondarySeqID-method	Sangerseq Accessor Functions
secondarySeqID<-	Sangerseq Accessor Functions
secondarySeqID<--method	Sangerseq Accessor Functions
setAllelePhase	Set Reference and Alternate Alleles
setAllelePhase-method	Set Reference and Alternate Alleles
traceMatrix	Sangerseq Accessor Functions
traceMatrix-method	Sangerseq Accessor Functions
traceMatrix<-	Sangerseq Accessor Functions
traceMatrix<--method	Sangerseq Accessor Functions