Qualitative biclustering algorithm for expression data analysis
in R
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Documentation for package ‘rqubic’ version 1.51.0
Help Pages
| rqubic-package | Qualitative biclustering algorithm for expression data analysis |
| BCconditionCount | Extract features and conditions |
| BCconditionCount-method | Extract features and conditions |
| BCconditions | Extract features and conditions |
| BCconditions-method | Extract features and conditions |
| BCcount | Class "QUBICBiclusterSet" |
| BCcount-method | Class "QUBICBiclusterSet" |
| BCfeatureCount | Extract features and conditions |
| BCfeatureCount-method | Extract features and conditions |
| BCfeatures | Extract features and conditions |
| BCfeatures-method | Extract features and conditions |
| combineBiclusts | Combine two or more Biclust objects into one |
| combineBiclusts-method | Combine two or more Biclust objects into one |
| combineBiclusts-methods | Combine two or more Biclust objects into one |
| conditionCount | Extract features and conditions |
| conditionCount-method | Extract features and conditions |
| conditionCount-methods | Extract features and conditions |
| conditions | Extract features and conditions |
| conditions-method | Extract features and conditions |
| conditions-methods | Extract features and conditions |
| eSetDimName | Get dimname from an eSet object |
| fcFilter | Feature-Condition Filter |
| fcFilter-method | Feature-Condition Filter |
| fcFilter-methods | Feature-Condition Filter |
| featureCount | Extract features and conditions |
| featureCount-method | Extract features and conditions |
| featureCount-methods | Extract features and conditions |
| featureNames-method | Extract features and conditions |
| features | Extract features and conditions |
| features-method | Extract features and conditions |
| features-methods | Extract features and conditions |
| generateSeeds | Generate seeds for biclustering |
| generateSeeds-method | Generate seeds for biclustering |
| generateSeeds-methods | Generate seeds for biclustering |
| info | Class "QUBICBiclusterSet" |
| info-method | Class "QUBICBiclusterSet" |
| NumberxCol | Class "QUBICBiclusterSet" |
| NumberxCol-method | Class "QUBICBiclusterSet" |
| parameter | Class "QUBICBiclusterSet" |
| parameter-method | Class "QUBICBiclusterSet" |
| parseQubicBlocks | Parse QUBIC Command Line Tool Output Files |
| parseQubicChars | Parse QUBIC Command Line Tool Output Files |
| parseQubicRules | Parse QUBIC Command Line Tool Output Files |
| quantileDiscretize | Discretize expression matrix for qualitative biclustering |
| quantileDiscretize-method | Discretize expression matrix for qualitative biclustering |
| quantileDiscretize-methods | Discretize expression matrix for qualitative biclustering |
| QUBICBiclusterSet-class | Class "QUBICBiclusterSet" |
| quBicluster | Qualitative Biclustering |
| readBiclusterResults | Import bicluster results from plain text files |
| RowxNumber | Class "QUBICBiclusterSet" |
| RowxNumber-method | Class "QUBICBiclusterSet" |
| rqubic | Qualitative biclustering algorithm for expression data analysis |
| sampleNames-method | Extract features and conditions |
| show-method | Class "QUBICBiclusterSet" |
| Svalue | Class "QUBICBiclusterSet" |
| Svalue-method | Class "QUBICBiclusterSet" |
| writeQubicInputFile | Write an ExpressionSet object into the file format required by the QUBIC command line tool |
| [-method | Class "QUBICBiclusterSet" |