Qualitative biclustering algorithm for expression data analysis in R


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Documentation for package ‘rqubic’ version 1.51.0

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rqubic-package Qualitative biclustering algorithm for expression data analysis
BCconditionCount Extract features and conditions
BCconditionCount-method Extract features and conditions
BCconditions Extract features and conditions
BCconditions-method Extract features and conditions
BCcount Class "QUBICBiclusterSet"
BCcount-method Class "QUBICBiclusterSet"
BCfeatureCount Extract features and conditions
BCfeatureCount-method Extract features and conditions
BCfeatures Extract features and conditions
BCfeatures-method Extract features and conditions
combineBiclusts Combine two or more Biclust objects into one
combineBiclusts-method Combine two or more Biclust objects into one
combineBiclusts-methods Combine two or more Biclust objects into one
conditionCount Extract features and conditions
conditionCount-method Extract features and conditions
conditionCount-methods Extract features and conditions
conditions Extract features and conditions
conditions-method Extract features and conditions
conditions-methods Extract features and conditions
eSetDimName Get dimname from an eSet object
fcFilter Feature-Condition Filter
fcFilter-method Feature-Condition Filter
fcFilter-methods Feature-Condition Filter
featureCount Extract features and conditions
featureCount-method Extract features and conditions
featureCount-methods Extract features and conditions
featureNames-method Extract features and conditions
features Extract features and conditions
features-method Extract features and conditions
features-methods Extract features and conditions
generateSeeds Generate seeds for biclustering
generateSeeds-method Generate seeds for biclustering
generateSeeds-methods Generate seeds for biclustering
info Class "QUBICBiclusterSet"
info-method Class "QUBICBiclusterSet"
NumberxCol Class "QUBICBiclusterSet"
NumberxCol-method Class "QUBICBiclusterSet"
parameter Class "QUBICBiclusterSet"
parameter-method Class "QUBICBiclusterSet"
parseQubicBlocks Parse QUBIC Command Line Tool Output Files
parseQubicChars Parse QUBIC Command Line Tool Output Files
parseQubicRules Parse QUBIC Command Line Tool Output Files
quantileDiscretize Discretize expression matrix for qualitative biclustering
quantileDiscretize-method Discretize expression matrix for qualitative biclustering
quantileDiscretize-methods Discretize expression matrix for qualitative biclustering
QUBICBiclusterSet-class Class "QUBICBiclusterSet"
quBicluster Qualitative Biclustering
readBiclusterResults Import bicluster results from plain text files
RowxNumber Class "QUBICBiclusterSet"
RowxNumber-method Class "QUBICBiclusterSet"
rqubic Qualitative biclustering algorithm for expression data analysis
sampleNames-method Extract features and conditions
show-method Class "QUBICBiclusterSet"
Svalue Class "QUBICBiclusterSet"
Svalue-method Class "QUBICBiclusterSet"
writeQubicInputFile Write an ExpressionSet object into the file format required by the QUBIC command line tool
[-method Class "QUBICBiclusterSet"