Protein Micro Array Data Management and Interactive Visualization


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Documentation for package ‘protGear’ version 1.9.0

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array_vars List the array structure variables
best_CV_estimation best CV estimation
bg_correct bg_correct
buffer_spots Extract buffer spots of data
check_sampleID_files \\_End_Function_\\ # Check existing sample ID names
create_dir Title Create directory function
cv_by_sample_estimation cv by sample
cv_estimation cv_estimation
extract_bg extract bg
launch_protGear_interactive launch_protGear_interactive
launch_select launch_select
matrix_normalise Normalize Arrays
merge_sampleID Merge sample ID with the array data
minpositive Get the minimum positive value
name_of_files Object names of a list
output_trend_stats Trend test using Cox–Stuart (C–S) and Mann–Kendall (M–K) trend tests
plot_bg Plot background
plot_buffer Plot the buffer values
plot_FB plot_FB
plot_normalised Comparison of normalised data by sample
plot_normalised_antigen Comparison of normalised data by feature
read_array_files Read array files
read_array_visualize Read a gpr file to visualize
rlm_normalise_matrix Nomrmalise using RLM
tag_subtract tag_subtract
visualize_slide Visualize the slide mimicking the original scan image.
visualize_slide_2d Visualize the slide mimicking the original scan image using a 2d plot.