backgroundDist | Background distribution. |
backgroundDist-method | ProfileDist |
computeScoreDist | Compute exact position weight/count matrix score distribution. |
INR | The position count matrix for INR. |
plotDist | Plot background and signal distributions. |
plotDist-method | ProfileDist |
ProfileDist | ProfileDist |
ProfileDist-class | ProfileDist |
regularizeMatrix | Careful regularization (pseudocount addition) to a position count matrix. |
score-method | ProfileDist |
scoreDistCutoffs | False discovery rate and power for PWM Score distributions. |
show-method | ProfileDist |
signalDist | Signal distribution. |
signalDist-method | ProfileDist |