multiWGCNA


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Documentation for package ‘multiWGCNA’ version 1.4.0

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bidirectionalBestMatches Best matching modules
cleanDatExpr cleanDatExpr
coexpressionLineGraph Coexpression Line Graph
computeOverlapsFromWGCNA computeOverlapsFromWGCNA
constructNetworks constructNetworks: Construct all the weighted gene correlation networks
diffCoexpression Differential co-expresison analysis
diffModuleExpression Differential module expression
drawMultiWGCNAnetwork Draw multiWGCNA network
GetDatExpr Get expression data
getPreservation getPreservation
iterate iterate: Iterate function across networks
makeTraitTable Generate a trait table from a sample table
moduleComparisonPlot Module comparison plot
moduleExpressionPlot Plots an expression profile for a module
moduleToModuleHeatmap Module to module heatmap
name name: Name of WGCNAobject
overlapComparisons Overlap comparisons
performANOVA Perform ANOVA
permutationTestResults Permutation test results
preservationComparisonPlot Preservation Comparison Scatterplot
preservationComparisons Preservation comparisons
PreservationPermutationTest PreservationPermutationTest
PreservationScoreDistribution PreservationScoreDistribution
runDME Run differential module expression
summarizeResults summarizeResults: Summarize results from a results list object
TOMFlowPlot TOMFlowPlot
topNGenes topNGenes: Top N genes of a module
WGCNA-class The WGCNA Class