bidirectionalBestMatches | Best matching modules |
cleanDatExpr | cleanDatExpr |
coexpressionLineGraph | Coexpression Line Graph |
computeOverlapsFromWGCNA | computeOverlapsFromWGCNA |
constructNetworks | constructNetworks: Construct all the weighted gene correlation networks |
diffCoexpression | Differential co-expresison analysis |
diffModuleExpression | Differential module expression |
drawMultiWGCNAnetwork | Draw multiWGCNA network |
GetDatExpr | Get expression data |
getPreservation | getPreservation |
iterate | iterate: Iterate function across networks |
makeTraitTable | Generate a trait table from a sample table |
moduleComparisonPlot | Module comparison plot |
moduleExpressionPlot | Plots an expression profile for a module |
moduleToModuleHeatmap | Module to module heatmap |
name | name: Name of WGCNAobject |
overlapComparisons | Overlap comparisons |
performANOVA | Perform ANOVA |
permutationTestResults | Permutation test results |
preservationComparisonPlot | Preservation Comparison Scatterplot |
preservationComparisons | Preservation comparisons |
PreservationPermutationTest | PreservationPermutationTest |
PreservationScoreDistribution | PreservationScoreDistribution |
runDME | Run differential module expression |
summarizeResults | summarizeResults: Summarize results from a results list object |
TOMFlowPlot | TOMFlowPlot |
topNGenes | topNGenes: Top N genes of a module |
WGCNA-class | The WGCNA Class |